Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08605

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and JDDGAC_08605 are separated by 175 nucleotidesJDDGAC_08605 and Arg_trna are separated by 488 nucleotidesArg_trna and Arg_trna are separated by 13 nucleotidesArg_trna and Ile2_trna are separated by 7 nucleotidesIle2_trna and JDDGAC_08630 are separated by 28 nucleotides JDDGAC_08595: tnp-IS3 - IS3 family transposase, at 1,510,745 to 1,511,632 tnp-IS3 JDDGAC_08600: tnp-IS3 - IS3 family transposase, at 1,511,632 to 1,511,958 tnp-IS3 JDDGAC_08605: JDDGAC_08605 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 1,512,134 to 1,513,984 _08605 JDDGAC_08615: Arg_trna - tRNA-Arg(tct), at 1,514,473 to 1,514,549 _trna JDDGAC_08620: Arg_trna - tRNA-Arg(tcg), at 1,514,563 to 1,514,639 _trna JDDGAC_08625: Ile2_trna - tRNA-Ile2(cat), at 1,514,647 to 1,514,722 _trna JDDGAC_08630: JDDGAC_08630 - AraC family transcriptional regulator, at 1,514,751 to 1,515,338 _08630 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1512.027 kb on - strandat 1513.648 kb on - strand, within JDDGAC_08605at 1513.648 kb on - strand, within JDDGAC_08605at 1513.648 kb on - strand, within JDDGAC_08605at 1513.648 kb on - strand, within JDDGAC_08605at 1513.648 kb on - strand, within JDDGAC_08605at 1513.651 kb on + strand, within JDDGAC_08605at 1513.652 kb on - strand, within JDDGAC_08605at 1513.674 kb on - strand, within JDDGAC_08605at 1513.791 kb on + strand, within JDDGAC_08605at 1513.792 kb on - strand, within JDDGAC_08605at 1513.968 kb on + strandat 1513.968 kb on + strandat 1514.006 kb on + strandat 1514.007 kb on - strandat 1514.007 kb on - strandat 1514.007 kb on - strandat 1514.213 kb on - strandat 1514.213 kb on - strandat 1514.324 kb on + strandat 1514.541 kb on + strand, within Arg_trnaat 1514.632 kb on - strandat 1514.964 kb on + strand, within JDDGAC_08630at 1514.965 kb on - strand, within JDDGAC_08630

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,512,027 - +0.2
1,513,648 - JDDGAC_08605 0.82 +2.0
1,513,648 - JDDGAC_08605 0.82 -0.4
1,513,648 - JDDGAC_08605 0.82 +0.5
1,513,648 - JDDGAC_08605 0.82 -1.2
1,513,648 - JDDGAC_08605 0.82 -0.5
1,513,651 + JDDGAC_08605 0.82 -0.8
1,513,652 - JDDGAC_08605 0.82 -0.7
1,513,674 - JDDGAC_08605 0.83 +1.2
1,513,791 + JDDGAC_08605 0.90 -0.7
1,513,792 - JDDGAC_08605 0.90 +0.1
1,513,968 + +0.4
1,513,968 + -0.8
1,514,006 + -0.0
1,514,007 - -0.7
1,514,007 - +3.7
1,514,007 - -0.9
1,514,213 - +0.6
1,514,213 - +0.8
1,514,324 + -2.0
1,514,541 + Arg_trna JDDGAC_08615 0.88 +1.8
1,514,632 - -1.7
1,514,964 + JDDGAC_08630 0.36 -0.2
1,514,965 - JDDGAC_08630 0.36 +0.5

Or see this region's nucleotide sequence