Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06595

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06585 and JDDGAC_06590 overlap by 4 nucleotidesJDDGAC_06590 and xis are separated by 103 nucleotidesxis and int overlap by 11 nucleotides JDDGAC_06585: JDDGAC_06585 - Replication protein P, at 1,147,958 to 1,148,659 _06585 JDDGAC_06590: JDDGAC_06590 - replication protein, at 1,148,656 to 1,149,480 _06590 JDDGAC_06595: xis - Excisionase, at 1,149,584 to 1,149,820 xis JDDGAC_06600: int - Integrase, at 1,149,810 to 1,150,952 int Position (kb) 1149 1150Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1149.107 kb on - strand, within JDDGAC_06590at 1149.482 kb on - strandat 1149.530 kb on + strandat 1149.570 kb on + strandat 1150.062 kb on - strand, within intat 1150.082 kb on + strand, within intat 1150.127 kb on - strand, within intat 1150.432 kb on + strand, within intat 1150.550 kb on + strand, within intat 1150.550 kb on + strand, within intat 1150.550 kb on + strand, within intat 1150.616 kb on + strand, within intat 1150.631 kb on + strand, within int

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,149,107 - JDDGAC_06590 0.55 -0.5
1,149,482 - +0.6
1,149,530 + -0.9
1,149,570 + +0.8
1,150,062 - int JDDGAC_06600 0.22 -0.8
1,150,082 + int JDDGAC_06600 0.24 +0.2
1,150,127 - int JDDGAC_06600 0.28 +0.1
1,150,432 + int JDDGAC_06600 0.54 -0.3
1,150,550 + int JDDGAC_06600 0.65 +4.2
1,150,550 + int JDDGAC_06600 0.65 -2.0
1,150,550 + int JDDGAC_06600 0.65 -1.0
1,150,616 + int JDDGAC_06600 0.71 +1.6
1,150,631 + int JDDGAC_06600 0.72 +0.1

Or see this region's nucleotide sequence