Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hI1514 and JDDGAC_05705 overlap by 14 nucleotides JDDGAC_05705 and JDDGAC_05710 overlap by 17 nucleotides
JDDGAC_05700: hI1514 - tail tape measure protein, at 992,227 to 994,302
hI1514
JDDGAC_05705: JDDGAC_05705 - Mu-like prophage DNA circulation protein, at 994,289 to 995,638
_05705
JDDGAC_05710: JDDGAC_05710 - phage tail protein, at 995,622 to 996,746
_05710
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 993.331 kb on + strand, within hI1514 at 993.383 kb on - strand, within hI1514 at 993.391 kb on + strand, within hI1514 at 993.397 kb on + strand, within hI1514 at 993.449 kb on + strand, within hI1514 at 993.573 kb on + strand, within hI1514 at 993.574 kb on - strand, within hI1514 at 993.623 kb on + strand, within hI1514 at 993.624 kb on - strand, within hI1514 at 993.624 kb on - strand, within hI1514 at 993.669 kb on + strand, within hI1514 at 993.670 kb on - strand, within hI1514 at 994.072 kb on - strand, within hI1514 at 994.084 kb on + strand, within hI1514 at 994.084 kb on + strand, within hI1514 at 994.084 kb on + strand, within hI1514 at 994.084 kb on + strand, within hI1514 at 994.092 kb on + strand, within hI1514 at 994.096 kb on + strand at 994.097 kb on - strand at 994.097 kb on - strand at 994.233 kb on + strand at 994.414 kb on - strand at 994.429 kb on + strand, within JDDGAC_05705 at 994.429 kb on + strand, within JDDGAC_05705 at 994.430 kb on - strand, within JDDGAC_05705 at 994.547 kb on + strand, within JDDGAC_05705 at 994.557 kb on + strand, within JDDGAC_05705 at 994.557 kb on + strand, within JDDGAC_05705 at 994.590 kb on - strand, within JDDGAC_05705 at 994.590 kb on - strand, within JDDGAC_05705 at 994.628 kb on - strand, within JDDGAC_05705 at 994.848 kb on + strand, within JDDGAC_05705 at 994.855 kb on + strand, within JDDGAC_05705 at 995.082 kb on + strand, within JDDGAC_05705 at 995.097 kb on - strand, within JDDGAC_05705 at 995.479 kb on - strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.487 kb on + strand, within JDDGAC_05705 at 995.492 kb on - strand, within JDDGAC_05705 at 995.643 kb on + strand at 995.644 kb on - strand at 996.007 kb on + strand, within JDDGAC_05710 at 996.007 kb on + strand, within JDDGAC_05710 at 996.120 kb on - strand, within JDDGAC_05710 at 996.638 kb on + strand at 996.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 993,331 + hI1514 JDDGAC_05700 0.53 +0.4 993,383 - hI1514 JDDGAC_05700 0.56 +1.2 993,391 + hI1514 JDDGAC_05700 0.56 -0.6 993,397 + hI1514 JDDGAC_05700 0.56 +1.5 993,449 + hI1514 JDDGAC_05700 0.59 -2.0 993,573 + hI1514 JDDGAC_05700 0.65 +1.1 993,574 - hI1514 JDDGAC_05700 0.65 +0.8 993,623 + hI1514 JDDGAC_05700 0.67 -0.4 993,624 - hI1514 JDDGAC_05700 0.67 +1.3 993,624 - hI1514 JDDGAC_05700 0.67 -0.7 993,669 + hI1514 JDDGAC_05700 0.69 -1.5 993,670 - hI1514 JDDGAC_05700 0.70 -1.6 994,072 - hI1514 JDDGAC_05700 0.89 -0.3 994,084 + hI1514 JDDGAC_05700 0.89 +0.6 994,084 + hI1514 JDDGAC_05700 0.89 +3.2 994,084 + hI1514 JDDGAC_05700 0.89 +0.2 994,084 + hI1514 JDDGAC_05700 0.89 -0.4 994,092 + hI1514 JDDGAC_05700 0.90 +1.2 994,096 + +0.4 994,097 - -1.4 994,097 - +2.4 994,233 + -0.4 994,414 - -2.1 994,429 + JDDGAC_05705 0.10 +1.0 994,429 + JDDGAC_05705 0.10 +2.3 994,430 - JDDGAC_05705 0.10 +0.1 994,547 + JDDGAC_05705 0.19 +0.8 994,557 + JDDGAC_05705 0.20 +0.7 994,557 + JDDGAC_05705 0.20 +0.5 994,590 - JDDGAC_05705 0.22 -0.1 994,590 - JDDGAC_05705 0.22 -0.1 994,628 - JDDGAC_05705 0.25 -1.5 994,848 + JDDGAC_05705 0.41 +1.1 994,855 + JDDGAC_05705 0.42 +0.5 995,082 + JDDGAC_05705 0.59 -1.5 995,097 - JDDGAC_05705 0.60 -3.0 995,479 - JDDGAC_05705 0.88 +1.0 995,487 + JDDGAC_05705 0.89 +1.5 995,487 + JDDGAC_05705 0.89 -1.8 995,487 + JDDGAC_05705 0.89 -2.0 995,487 + JDDGAC_05705 0.89 -0.1 995,492 - JDDGAC_05705 0.89 +2.0 995,643 + +0.5 995,644 - +1.8 996,007 + JDDGAC_05710 0.34 +0.1 996,007 + JDDGAC_05710 0.34 +1.4 996,120 - JDDGAC_05710 0.44 +0.2 996,638 + -2.2 996,638 + -0.0
Or see this region's nucleotide sequence