Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rluB and yciQ are separated by 212 nucleotides yciQ and yciO are separated by 27 nucleotides yciO and yciV overlap by 4 nucleotides
JDDGAC_05175: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 909,475 to 910,347
rluB
JDDGAC_05180: yciQ - Uncharacterized protein YciQ, at 910,560 to 912,143
yciQ
JDDGAC_05185: yciO - L-threonylcarbamoyladenylate synthase, at 912,171 to 912,791
yciO
JDDGAC_05190: yciV - 5'-3' exoribonuclease, at 912,788 to 913,669
yciV
Position (kb) 910
911
912
913 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 909.632 kb on + strand, within rluB at 909.633 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 910.130 kb on + strand, within rluB at 910.134 kb on - strand, within rluB at 910.386 kb on - strand at 910.386 kb on - strand at 910.415 kb on + strand at 910.416 kb on - strand at 910.416 kb on - strand at 910.433 kb on - strand at 910.463 kb on - strand at 910.467 kb on - strand at 910.483 kb on + strand at 910.511 kb on - strand at 910.511 kb on - strand at 910.518 kb on + strand at 910.519 kb on - strand at 910.558 kb on - strand at 910.846 kb on + strand, within yciQ at 910.847 kb on - strand, within yciQ at 910.856 kb on + strand, within yciQ at 910.961 kb on - strand, within yciQ at 910.974 kb on - strand, within yciQ at 910.976 kb on - strand, within yciQ at 910.989 kb on + strand, within yciQ at 910.990 kb on - strand, within yciQ at 911.018 kb on - strand, within yciQ at 911.160 kb on - strand, within yciQ at 911.310 kb on + strand, within yciQ at 911.354 kb on - strand, within yciQ at 911.355 kb on + strand, within yciQ at 911.355 kb on + strand, within yciQ at 911.356 kb on - strand, within yciQ at 911.356 kb on - strand, within yciQ at 912.053 kb on - strand at 912.053 kb on - strand at 912.080 kb on - strand at 912.172 kb on + strand at 912.173 kb on - strand at 912.174 kb on + strand at 912.196 kb on - strand at 912.221 kb on + strand at 912.432 kb on - strand, within yciO at 912.500 kb on + strand, within yciO at 912.500 kb on + strand, within yciO at 912.502 kb on + strand, within yciO at 912.502 kb on + strand, within yciO at 912.502 kb on + strand, within yciO at 912.503 kb on - strand, within yciO at 912.503 kb on - strand, within yciO at 912.503 kb on - strand, within yciO at 912.744 kb on + strand at 912.745 kb on - strand at 912.792 kb on - strand at 912.868 kb on + strand at 912.926 kb on + strand, within yciV at 913.052 kb on - strand, within yciV at 913.083 kb on - strand, within yciV at 913.083 kb on - strand, within yciV at 913.083 kb on - strand, within yciV
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 909,632 + rluB JDDGAC_05175 0.18 +0.2 909,633 - rluB JDDGAC_05175 0.18 -0.7 909,637 - rluB JDDGAC_05175 0.19 +0.5 909,637 - rluB JDDGAC_05175 0.19 -0.2 909,637 - rluB JDDGAC_05175 0.19 +3.6 909,637 - rluB JDDGAC_05175 0.19 +0.2 909,637 - rluB JDDGAC_05175 0.19 +0.6 910,130 + rluB JDDGAC_05175 0.75 -2.4 910,134 - rluB JDDGAC_05175 0.75 +0.9 910,386 - +0.4 910,386 - +0.2 910,415 + +0.7 910,416 - -0.9 910,416 - +2.1 910,433 - -1.6 910,463 - -1.6 910,467 - +0.7 910,483 + +0.2 910,511 - -1.7 910,511 - +0.7 910,518 + -1.3 910,519 - -4.1 910,558 - -2.1 910,846 + yciQ JDDGAC_05180 0.18 +0.7 910,847 - yciQ JDDGAC_05180 0.18 +2.6 910,856 + yciQ JDDGAC_05180 0.19 +0.3 910,961 - yciQ JDDGAC_05180 0.25 -0.9 910,974 - yciQ JDDGAC_05180 0.26 -2.2 910,976 - yciQ JDDGAC_05180 0.26 -2.3 910,989 + yciQ JDDGAC_05180 0.27 -0.6 910,990 - yciQ JDDGAC_05180 0.27 +0.5 911,018 - yciQ JDDGAC_05180 0.29 -0.7 911,160 - yciQ JDDGAC_05180 0.38 +0.1 911,310 + yciQ JDDGAC_05180 0.47 -1.2 911,354 - yciQ JDDGAC_05180 0.50 -1.4 911,355 + yciQ JDDGAC_05180 0.50 +0.1 911,355 + yciQ JDDGAC_05180 0.50 +2.4 911,356 - yciQ JDDGAC_05180 0.50 +0.5 911,356 - yciQ JDDGAC_05180 0.50 -0.2 912,053 - +0.5 912,053 - +0.3 912,080 - -0.5 912,172 + +1.0 912,173 - -0.0 912,174 + -1.0 912,196 - -0.0 912,221 + -0.7 912,432 - yciO JDDGAC_05185 0.42 +0.0 912,500 + yciO JDDGAC_05185 0.53 +0.4 912,500 + yciO JDDGAC_05185 0.53 +1.0 912,502 + yciO JDDGAC_05185 0.53 -0.1 912,502 + yciO JDDGAC_05185 0.53 -0.8 912,502 + yciO JDDGAC_05185 0.53 -1.1 912,503 - yciO JDDGAC_05185 0.53 -0.4 912,503 - yciO JDDGAC_05185 0.53 -1.7 912,503 - yciO JDDGAC_05185 0.53 +0.3 912,744 + -1.3 912,745 - -2.3 912,792 - -2.3 912,868 + +2.6 912,926 + yciV JDDGAC_05190 0.16 +0.9 913,052 - yciV JDDGAC_05190 0.30 -3.0 913,083 - yciV JDDGAC_05190 0.33 -0.6 913,083 - yciV JDDGAC_05190 0.33 -2.0 913,083 - yciV JDDGAC_05190 0.33 -0.1
Or see this region's nucleotide sequence