Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sopA and sopA overlap by 1 nucleotides sopA and JDDGAC_29985 are separated by 584 nucleotides
JDDGAC_29975: sopA - plasmid-partitioning protein SopA, at 19,610 to 20,776
sopA
JDDGAC_29980: sopA - plasmid-partitioning protein SopA, at 20,776 to 21,747
sopA
JDDGAC_29985: JDDGAC_29985 - DUF1281 domain-containing protein, at 22,332 to 23,258
_29985
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.870 kb on + strand, within sopA at 19.876 kb on + strand, within sopA at 20.067 kb on - strand, within sopA at 20.157 kb on + strand, within sopA at 20.322 kb on + strand, within sopA at 20.322 kb on + strand, within sopA at 20.327 kb on - strand, within sopA at 20.370 kb on + strand, within sopA at 20.370 kb on + strand, within sopA at 20.371 kb on - strand, within sopA at 20.770 kb on + strand at 20.970 kb on + strand, within sopA at 21.104 kb on + strand, within sopA at 21.663 kb on + strand at 21.697 kb on - strand at 21.761 kb on + strand at 21.772 kb on + strand at 21.772 kb on + strand at 21.786 kb on + strand at 21.787 kb on - strand at 21.815 kb on + strand at 21.815 kb on + strand at 21.828 kb on + strand at 21.829 kb on - strand at 21.857 kb on + strand at 21.900 kb on + strand at 21.943 kb on + strand at 21.943 kb on + strand at 21.943 kb on + strand at 21.944 kb on - strand at 21.944 kb on - strand at 21.944 kb on - strand at 21.973 kb on - strand at 21.980 kb on + strand at 21.981 kb on - strand at 21.981 kb on - strand at 21.981 kb on - strand at 22.003 kb on + strand at 22.003 kb on + strand at 22.056 kb on - strand at 22.126 kb on - strand at 22.355 kb on + strand at 22.359 kb on + strand at 22.359 kb on + strand at 22.360 kb on - strand at 22.451 kb on + strand, within JDDGAC_29985 at 22.452 kb on - strand, within JDDGAC_29985 at 22.606 kb on + strand, within JDDGAC_29985
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 19,870 + sopA JDDGAC_29975 0.22 -0.6 19,876 + sopA JDDGAC_29975 0.23 -1.4 20,067 - sopA JDDGAC_29975 0.39 -1.4 20,157 + sopA JDDGAC_29975 0.47 -2.6 20,322 + sopA JDDGAC_29975 0.61 +0.7 20,322 + sopA JDDGAC_29975 0.61 -2.4 20,327 - sopA JDDGAC_29975 0.61 -0.6 20,370 + sopA JDDGAC_29975 0.65 -1.4 20,370 + sopA JDDGAC_29975 0.65 +0.3 20,371 - sopA JDDGAC_29975 0.65 -1.2 20,770 + +0.2 20,970 + sopA JDDGAC_29980 0.20 -3.2 21,104 + sopA JDDGAC_29980 0.34 -1.4 21,663 + -3.4 21,697 - -1.4 21,761 + -0.6 21,772 + +0.9 21,772 + +0.7 21,786 + +0.2 21,787 - -0.2 21,815 + -0.1 21,815 + +0.2 21,828 + +0.5 21,829 - -0.2 21,857 + -0.8 21,900 + +0.6 21,943 + +0.7 21,943 + +0.0 21,943 + +1.0 21,944 - -1.3 21,944 - -0.0 21,944 - +1.8 21,973 - -0.1 21,980 + +1.2 21,981 - +0.9 21,981 - +0.6 21,981 - +0.9 22,003 + +0.8 22,003 + -0.4 22,056 - -0.2 22,126 - -0.0 22,355 + +0.0 22,359 + +0.0 22,359 + +1.4 22,360 - -0.1 22,451 + JDDGAC_29985 0.13 +0.1 22,452 - JDDGAC_29985 0.13 +0.4 22,606 + JDDGAC_29985 0.30 +0.4
Or see this region's nucleotide sequence