Strain Fitness in Escherichia coli ECRC98 around JDDGAC_29895

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and ehxC are separated by 540 nucleotidesehxC and ehxA are separated by 1 nucleotides JDDGAC_29890: tnp-IS3 - IS3 family transposase, at 1,140 to 1,793 tnp-IS3 JDDGAC_29895: ehxC - enterohemolysin-activating lysine-acyltransferase EhxC, at 2,334 to 2,849 ehxC JDDGAC_29900: ehxA - enterohemolysin EhxA, at 2,851 to 5,847 ehxA Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1.338 kb on + strand, within tnp-IS3at 1.338 kb on + strand, within tnp-IS3at 1.339 kb on - strand, within tnp-IS3at 1.498 kb on - strand, within tnp-IS3at 1.498 kb on - strand, within tnp-IS3at 1.499 kb on + strand, within tnp-IS3at 1.500 kb on - strand, within tnp-IS3at 1.500 kb on - strand, within tnp-IS3at 1.522 kb on + strand, within tnp-IS3at 1.523 kb on - strand, within tnp-IS3at 1.669 kb on + strand, within tnp-IS3at 1.669 kb on + strand, within tnp-IS3at 1.677 kb on + strand, within tnp-IS3at 1.677 kb on + strand, within tnp-IS3at 1.689 kb on + strand, within tnp-IS3at 1.690 kb on - strand, within tnp-IS3at 1.717 kb on - strand, within tnp-IS3at 1.798 kb on + strandat 1.826 kb on + strandat 1.895 kb on + strandat 1.923 kb on - strandat 2.144 kb on + strandat 2.287 kb on + strandat 2.719 kb on + strand, within ehxCat 3.219 kb on + strand, within ehxAat 3.384 kb on - strand, within ehxAat 3.387 kb on + strand, within ehxAat 3.399 kb on + strand, within ehxAat 3.401 kb on + strand, within ehxAat 3.576 kb on + strand, within ehxAat 3.600 kb on + strand, within ehxAat 3.600 kb on + strand, within ehxAat 3.600 kb on + strand, within ehxAat 3.600 kb on + strand, within ehxAat 3.678 kb on + strand, within ehxAat 3.750 kb on + strand, within ehxAat 3.751 kb on - strand, within ehxA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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1,338 + tnp-IS3 JDDGAC_29890 0.30 -0.1
1,338 + tnp-IS3 JDDGAC_29890 0.30 +0.9
1,339 - tnp-IS3 JDDGAC_29890 0.30 +0.0
1,498 - tnp-IS3 JDDGAC_29890 0.55 -0.3
1,498 - tnp-IS3 JDDGAC_29890 0.55 +0.6
1,499 + tnp-IS3 JDDGAC_29890 0.55 -0.4
1,500 - tnp-IS3 JDDGAC_29890 0.55 -2.3
1,500 - tnp-IS3 JDDGAC_29890 0.55 +0.4
1,522 + tnp-IS3 JDDGAC_29890 0.58 -0.4
1,523 - tnp-IS3 JDDGAC_29890 0.59 +0.2
1,669 + tnp-IS3 JDDGAC_29890 0.81 +0.2
1,669 + tnp-IS3 JDDGAC_29890 0.81 +0.5
1,677 + tnp-IS3 JDDGAC_29890 0.82 -1.5
1,677 + tnp-IS3 JDDGAC_29890 0.82 +0.3
1,689 + tnp-IS3 JDDGAC_29890 0.84 -0.6
1,690 - tnp-IS3 JDDGAC_29890 0.84 +1.7
1,717 - tnp-IS3 JDDGAC_29890 0.88 +0.2
1,798 + +0.2
1,826 + +0.4
1,895 + +1.9
1,923 - -0.3
2,144 + +2.8
2,287 + +0.0
2,719 + ehxC JDDGAC_29895 0.75 +1.9
3,219 + ehxA JDDGAC_29900 0.12 -0.2
3,384 - ehxA JDDGAC_29900 0.18 -0.9
3,387 + ehxA JDDGAC_29900 0.18 -0.5
3,399 + ehxA JDDGAC_29900 0.18 -0.2
3,401 + ehxA JDDGAC_29900 0.18 +0.0
3,576 + ehxA JDDGAC_29900 0.24 +0.7
3,600 + ehxA JDDGAC_29900 0.25 -0.7
3,600 + ehxA JDDGAC_29900 0.25 -1.1
3,600 + ehxA JDDGAC_29900 0.25 +1.3
3,600 + ehxA JDDGAC_29900 0.25 -0.2
3,678 + ehxA JDDGAC_29900 0.28 +0.7
3,750 + ehxA JDDGAC_29900 0.30 -1.2
3,751 - ehxA JDDGAC_29900 0.30 +0.3

Or see this region's nucleotide sequence