Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbl and Asn_trna are separated by 37 nucleotides Asn_trna and yeeO are separated by 193 nucleotides yeeO and Asn_trna are separated by 100 nucleotides Asn_trna and ycdB are separated by 449 nucleotides
JDDGAC_29285: cbl - HTH-type transcriptional regulator Cbl, at 5,586,263 to 5,587,213
cbl
JDDGAC_29290: Asn_trna - tRNA-Asn(gtt), at 5,587,251 to 5,587,326
_trna
JDDGAC_29295: yeeO - toxic metabolite efflux MATE transporter YeeO, at 5,587,520 to 5,588,974
yeeO
JDDGAC_29300: Asn_trna - tRNA-Asn(gtt), at 5,589,075 to 5,589,150
_trna
JDDGAC_29305: ycdB - putative transcriptional regulatory protein YcdB, at 5,589,600 to 5,590,316
ycdB
Position (kb) 5587
5588
5589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5586.532 kb on + strand, within cbl at 5586.551 kb on - strand, within cbl at 5586.581 kb on - strand, within cbl at 5586.581 kb on - strand, within cbl at 5586.581 kb on - strand, within cbl at 5586.680 kb on - strand, within cbl at 5586.721 kb on + strand, within cbl at 5586.721 kb on + strand, within cbl at 5586.766 kb on + strand, within cbl at 5586.767 kb on - strand, within cbl at 5586.805 kb on + strand, within cbl at 5586.920 kb on - strand, within cbl at 5586.923 kb on - strand, within cbl at 5586.925 kb on - strand, within cbl at 5586.925 kb on - strand, within cbl at 5586.925 kb on - strand, within cbl at 5586.960 kb on - strand, within cbl at 5586.988 kb on - strand, within cbl at 5587.063 kb on + strand, within cbl at 5587.063 kb on + strand, within cbl at 5587.063 kb on + strand, within cbl at 5587.063 kb on + strand, within cbl at 5587.066 kb on + strand, within cbl at 5587.066 kb on + strand, within cbl at 5587.067 kb on - strand, within cbl at 5587.106 kb on - strand, within cbl at 5587.209 kb on + strand at 5587.229 kb on - strand at 5587.408 kb on - strand at 5587.510 kb on - strand at 5587.526 kb on - strand at 5587.586 kb on + strand at 5587.780 kb on + strand, within yeeO at 5587.781 kb on - strand, within yeeO at 5587.783 kb on + strand, within yeeO at 5587.783 kb on + strand, within yeeO at 5587.802 kb on - strand, within yeeO at 5587.894 kb on + strand, within yeeO at 5587.973 kb on + strand, within yeeO at 5588.089 kb on + strand, within yeeO at 5588.095 kb on + strand, within yeeO at 5588.190 kb on - strand, within yeeO at 5588.191 kb on + strand, within yeeO at 5588.290 kb on + strand, within yeeO at 5588.290 kb on + strand, within yeeO at 5588.314 kb on + strand, within yeeO at 5588.474 kb on - strand, within yeeO at 5588.482 kb on + strand, within yeeO at 5588.483 kb on - strand, within yeeO at 5588.512 kb on - strand, within yeeO at 5588.676 kb on + strand, within yeeO at 5588.676 kb on + strand, within yeeO at 5588.680 kb on + strand, within yeeO at 5588.681 kb on - strand, within yeeO at 5588.749 kb on + strand, within yeeO at 5588.750 kb on - strand, within yeeO at 5588.750 kb on - strand, within yeeO at 5588.762 kb on - strand, within yeeO at 5589.173 kb on + strand at 5589.355 kb on + strand at 5589.416 kb on + strand at 5589.900 kb on - strand, within ycdB at 5589.900 kb on - strand, within ycdB at 5589.932 kb on - strand, within ycdB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,586,532 + cbl JDDGAC_29285 0.28 +1.5 5,586,551 - cbl JDDGAC_29285 0.30 -0.3 5,586,581 - cbl JDDGAC_29285 0.33 -0.4 5,586,581 - cbl JDDGAC_29285 0.33 +0.0 5,586,581 - cbl JDDGAC_29285 0.33 -1.3 5,586,680 - cbl JDDGAC_29285 0.44 -0.9 5,586,721 + cbl JDDGAC_29285 0.48 -0.1 5,586,721 + cbl JDDGAC_29285 0.48 +2.3 5,586,766 + cbl JDDGAC_29285 0.53 -0.5 5,586,767 - cbl JDDGAC_29285 0.53 +0.8 5,586,805 + cbl JDDGAC_29285 0.57 +0.1 5,586,920 - cbl JDDGAC_29285 0.69 -0.9 5,586,923 - cbl JDDGAC_29285 0.69 +0.2 5,586,925 - cbl JDDGAC_29285 0.70 +0.3 5,586,925 - cbl JDDGAC_29285 0.70 +0.3 5,586,925 - cbl JDDGAC_29285 0.70 +0.4 5,586,960 - cbl JDDGAC_29285 0.73 +0.9 5,586,988 - cbl JDDGAC_29285 0.76 +1.3 5,587,063 + cbl JDDGAC_29285 0.84 +0.3 5,587,063 + cbl JDDGAC_29285 0.84 -0.1 5,587,063 + cbl JDDGAC_29285 0.84 +1.5 5,587,063 + cbl JDDGAC_29285 0.84 -0.0 5,587,066 + cbl JDDGAC_29285 0.84 -0.1 5,587,066 + cbl JDDGAC_29285 0.84 +0.7 5,587,067 - cbl JDDGAC_29285 0.85 +0.2 5,587,106 - cbl JDDGAC_29285 0.89 +1.1 5,587,209 + -0.5 5,587,229 - +0.3 5,587,408 - +0.7 5,587,510 - +0.4 5,587,526 - -0.5 5,587,586 + -2.1 5,587,780 + yeeO JDDGAC_29295 0.18 -0.9 5,587,781 - yeeO JDDGAC_29295 0.18 -2.5 5,587,783 + yeeO JDDGAC_29295 0.18 -0.1 5,587,783 + yeeO JDDGAC_29295 0.18 -0.0 5,587,802 - yeeO JDDGAC_29295 0.19 -0.2 5,587,894 + yeeO JDDGAC_29295 0.26 -0.3 5,587,973 + yeeO JDDGAC_29295 0.31 +0.6 5,588,089 + yeeO JDDGAC_29295 0.39 -0.0 5,588,095 + yeeO JDDGAC_29295 0.40 -0.4 5,588,190 - yeeO JDDGAC_29295 0.46 +0.7 5,588,191 + yeeO JDDGAC_29295 0.46 -0.4 5,588,290 + yeeO JDDGAC_29295 0.53 -0.1 5,588,290 + yeeO JDDGAC_29295 0.53 +0.9 5,588,314 + yeeO JDDGAC_29295 0.55 +0.0 5,588,474 - yeeO JDDGAC_29295 0.66 +0.5 5,588,482 + yeeO JDDGAC_29295 0.66 +1.7 5,588,483 - yeeO JDDGAC_29295 0.66 -1.8 5,588,512 - yeeO JDDGAC_29295 0.68 -1.9 5,588,676 + yeeO JDDGAC_29295 0.79 +0.1 5,588,676 + yeeO JDDGAC_29295 0.79 +0.4 5,588,680 + yeeO JDDGAC_29295 0.80 -1.9 5,588,681 - yeeO JDDGAC_29295 0.80 -0.9 5,588,749 + yeeO JDDGAC_29295 0.84 -0.0 5,588,750 - yeeO JDDGAC_29295 0.85 +0.4 5,588,750 - yeeO JDDGAC_29295 0.85 -0.0 5,588,762 - yeeO JDDGAC_29295 0.85 +0.7 5,589,173 + +0.0 5,589,355 + +0.1 5,589,416 + -0.2 5,589,900 - ycdB JDDGAC_29305 0.42 +0.5 5,589,900 - ycdB JDDGAC_29305 0.42 +1.5 5,589,932 - ycdB JDDGAC_29305 0.46 -0.2
Or see this region's nucleotide sequence