Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28880 and ninG overlap by 1 nucleotides ninG and JDDGAC_28890 overlap by 4 nucleotides JDDGAC_28890 and JDDGAC_28895 overlap by 10 nucleotides JDDGAC_28895 and Ile2_trna are separated by 313 nucleotides Ile2_trna and Arg_trna are separated by 1 nucleotides Arg_trna and Arg_trna are separated by 13 nucleotides
JDDGAC_28880: JDDGAC_28880 - DNA-binding protein, at 5,522,400 to 5,523,122
_28880
JDDGAC_28885: ninG - Protein ninG, at 5,523,122 to 5,523,727
ninG
JDDGAC_28890: JDDGAC_28890 - Serine/threonine-protein phosphatase, at 5,523,724 to 5,524,395
_28890
JDDGAC_28895: JDDGAC_28895 - antiterminator, at 5,524,386 to 5,524,874
_28895
JDDGAC_28900: Ile2_trna - tRNA-Ile2(cat), at 5,525,188 to 5,525,263
_trna
JDDGAC_28905: Arg_trna - tRNA-Arg(tcg), at 5,525,265 to 5,525,341
_trna
JDDGAC_28910: Arg_trna - tRNA-Arg(tct), at 5,525,355 to 5,525,431
_trna
Position (kb) 5523
5524
5525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5522.802 kb on - strand, within JDDGAC_28880 at 5522.802 kb on - strand, within JDDGAC_28880 at 5522.962 kb on - strand, within JDDGAC_28880 at 5522.964 kb on - strand, within JDDGAC_28880 at 5522.964 kb on - strand, within JDDGAC_28880 at 5523.006 kb on - strand, within JDDGAC_28880 at 5523.082 kb on + strand at 5523.120 kb on + strand at 5523.242 kb on - strand, within ninG at 5523.511 kb on + strand, within ninG at 5524.321 kb on + strand, within JDDGAC_28890 at 5524.394 kb on - strand at 5524.403 kb on - strand at 5524.502 kb on - strand, within JDDGAC_28895 at 5524.541 kb on + strand, within JDDGAC_28895 at 5524.541 kb on + strand, within JDDGAC_28895 at 5524.560 kb on - strand, within JDDGAC_28895 at 5524.608 kb on + strand, within JDDGAC_28895 at 5524.609 kb on - strand, within JDDGAC_28895 at 5524.644 kb on + strand, within JDDGAC_28895 at 5524.683 kb on + strand, within JDDGAC_28895 at 5524.686 kb on + strand, within JDDGAC_28895 at 5524.687 kb on - strand, within JDDGAC_28895 at 5524.687 kb on - strand, within JDDGAC_28895 at 5524.868 kb on - strand at 5524.872 kb on + strand at 5524.976 kb on + strand at 5525.078 kb on + strand at 5525.177 kb on - strand at 5525.286 kb on - strand, within Arg_trna at 5525.350 kb on - strand at 5525.363 kb on - strand, within Arg_trna at 5525.363 kb on - strand, within Arg_trna
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,522,802 - JDDGAC_28880 0.56 -2.2 5,522,802 - JDDGAC_28880 0.56 -0.5 5,522,962 - JDDGAC_28880 0.78 +0.1 5,522,964 - JDDGAC_28880 0.78 +0.1 5,522,964 - JDDGAC_28880 0.78 -0.3 5,523,006 - JDDGAC_28880 0.84 -3.3 5,523,082 + -1.2 5,523,120 + +0.1 5,523,242 - ninG JDDGAC_28885 0.20 -0.1 5,523,511 + ninG JDDGAC_28885 0.64 -0.9 5,524,321 + JDDGAC_28890 0.89 -0.8 5,524,394 - +0.4 5,524,403 - -0.7 5,524,502 - JDDGAC_28895 0.24 -1.5 5,524,541 + JDDGAC_28895 0.32 +0.0 5,524,541 + JDDGAC_28895 0.32 -0.6 5,524,560 - JDDGAC_28895 0.36 +0.9 5,524,608 + JDDGAC_28895 0.45 -0.6 5,524,609 - JDDGAC_28895 0.46 -0.0 5,524,644 + JDDGAC_28895 0.53 +0.2 5,524,683 + JDDGAC_28895 0.61 -0.6 5,524,686 + JDDGAC_28895 0.61 +0.4 5,524,687 - JDDGAC_28895 0.62 +2.3 5,524,687 - JDDGAC_28895 0.62 -0.9 5,524,868 - -0.4 5,524,872 + -0.5 5,524,976 + -0.2 5,525,078 + +0.4 5,525,177 - -0.1 5,525,286 - Arg_trna JDDGAC_28905 0.27 +0.2 5,525,350 - +0.8 5,525,363 - Arg_trna JDDGAC_28910 0.10 +0.2 5,525,363 - Arg_trna JDDGAC_28910 0.10 +1.0
Or see this region's nucleotide sequence