Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28510 and galF are separated by 242 nucleotides galF and wcaA are separated by 318 nucleotides
JDDGAC_28510: JDDGAC_28510 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 5,469,512 to 5,470,507
_28510
JDDGAC_28515: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 5,470,750 to 5,471,643
galF
JDDGAC_28520: wcaA - glycosyl transferase, at 5,471,962 to 5,472,744
wcaA
Position (kb) 5470
5471
5472 Strain fitness (log2 ratio) -10
-9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 5469.756 kb on - strand, within JDDGAC_28510 at 5470.032 kb on - strand, within JDDGAC_28510 at 5470.032 kb on - strand, within JDDGAC_28510 at 5470.032 kb on - strand, within JDDGAC_28510 at 5470.067 kb on - strand, within JDDGAC_28510 at 5470.091 kb on + strand, within JDDGAC_28510 at 5470.091 kb on + strand, within JDDGAC_28510 at 5470.091 kb on + strand, within JDDGAC_28510 at 5470.092 kb on - strand, within JDDGAC_28510 at 5470.092 kb on - strand, within JDDGAC_28510 at 5470.093 kb on + strand, within JDDGAC_28510 at 5470.094 kb on - strand, within JDDGAC_28510 at 5470.094 kb on - strand, within JDDGAC_28510 at 5470.106 kb on + strand, within JDDGAC_28510 at 5470.107 kb on - strand, within JDDGAC_28510 at 5470.107 kb on - strand, within JDDGAC_28510 at 5470.172 kb on + strand, within JDDGAC_28510 at 5470.174 kb on + strand, within JDDGAC_28510 at 5470.178 kb on + strand, within JDDGAC_28510 at 5470.178 kb on + strand, within JDDGAC_28510 at 5470.178 kb on + strand, within JDDGAC_28510 at 5470.178 kb on + strand, within JDDGAC_28510 at 5470.179 kb on - strand, within JDDGAC_28510 at 5470.421 kb on + strand at 5470.423 kb on + strand at 5470.423 kb on + strand at 5470.550 kb on + strand at 5470.564 kb on + strand at 5470.571 kb on + strand at 5470.629 kb on + strand at 5470.629 kb on + strand at 5470.647 kb on + strand at 5470.667 kb on + strand at 5470.679 kb on + strand at 5470.679 kb on + strand at 5470.679 kb on + strand at 5470.679 kb on + strand at 5470.681 kb on + strand at 5470.703 kb on + strand at 5470.797 kb on + strand at 5470.864 kb on + strand, within galF at 5470.864 kb on + strand, within galF at 5470.865 kb on - strand, within galF at 5470.865 kb on - strand, within galF at 5470.967 kb on + strand, within galF at 5471.003 kb on + strand, within galF at 5471.015 kb on + strand, within galF at 5471.022 kb on + strand, within galF at 5471.046 kb on + strand, within galF at 5471.073 kb on - strand, within galF at 5471.093 kb on + strand, within galF at 5471.247 kb on + strand, within galF at 5471.430 kb on + strand, within galF at 5471.430 kb on + strand, within galF at 5471.454 kb on + strand, within galF at 5471.530 kb on + strand, within galF at 5471.554 kb on + strand at 5471.556 kb on + strand at 5471.556 kb on + strand at 5471.575 kb on + strand at 5471.582 kb on + strand at 5472.302 kb on + strand, within wcaA at 5472.635 kb on + strand, within wcaA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,469,756 - JDDGAC_28510 0.24 -4.3 5,470,032 - JDDGAC_28510 0.52 -3.2 5,470,032 - JDDGAC_28510 0.52 -3.9 5,470,032 - JDDGAC_28510 0.52 -4.4 5,470,067 - JDDGAC_28510 0.56 -4.2 5,470,091 + JDDGAC_28510 0.58 -3.7 5,470,091 + JDDGAC_28510 0.58 -1.4 5,470,091 + JDDGAC_28510 0.58 -6.7 5,470,092 - JDDGAC_28510 0.58 -2.3 5,470,092 - JDDGAC_28510 0.58 -5.4 5,470,093 + JDDGAC_28510 0.58 -3.1 5,470,094 - JDDGAC_28510 0.58 -4.5 5,470,094 - JDDGAC_28510 0.58 -1.8 5,470,106 + JDDGAC_28510 0.60 -6.0 5,470,107 - JDDGAC_28510 0.60 -3.3 5,470,107 - JDDGAC_28510 0.60 -4.2 5,470,172 + JDDGAC_28510 0.66 -5.6 5,470,174 + JDDGAC_28510 0.66 -2.3 5,470,178 + JDDGAC_28510 0.67 -4.8 5,470,178 + JDDGAC_28510 0.67 -4.3 5,470,178 + JDDGAC_28510 0.67 -6.9 5,470,178 + JDDGAC_28510 0.67 -10.1 5,470,179 - JDDGAC_28510 0.67 -2.3 5,470,421 + -3.0 5,470,423 + -9.7 5,470,423 + -5.6 5,470,550 + -0.2 5,470,564 + +0.1 5,470,571 + -0.2 5,470,629 + -0.1 5,470,629 + -0.4 5,470,647 + +1.0 5,470,667 + +0.2 5,470,679 + -0.2 5,470,679 + +0.2 5,470,679 + +0.1 5,470,679 + +0.8 5,470,681 + -0.4 5,470,703 + -1.2 5,470,797 + -5.5 5,470,864 + galF JDDGAC_28515 0.13 +0.2 5,470,864 + galF JDDGAC_28515 0.13 -2.2 5,470,865 - galF JDDGAC_28515 0.13 -3.8 5,470,865 - galF JDDGAC_28515 0.13 -3.7 5,470,967 + galF JDDGAC_28515 0.24 -1.9 5,471,003 + galF JDDGAC_28515 0.28 -2.6 5,471,015 + galF JDDGAC_28515 0.30 -2.5 5,471,022 + galF JDDGAC_28515 0.30 -3.9 5,471,046 + galF JDDGAC_28515 0.33 -3.1 5,471,073 - galF JDDGAC_28515 0.36 -0.4 5,471,093 + galF JDDGAC_28515 0.38 -2.3 5,471,247 + galF JDDGAC_28515 0.56 -0.0 5,471,430 + galF JDDGAC_28515 0.76 -0.7 5,471,430 + galF JDDGAC_28515 0.76 -0.4 5,471,454 + galF JDDGAC_28515 0.79 -0.6 5,471,530 + galF JDDGAC_28515 0.87 -1.1 5,471,554 + -0.5 5,471,556 + -0.8 5,471,556 + +0.8 5,471,575 + +0.4 5,471,582 + -0.5 5,472,302 + wcaA JDDGAC_28520 0.43 -4.0 5,472,635 + wcaA JDDGAC_28520 0.86 -4.2
Or see this region's nucleotide sequence