Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gatD and glpR are separated by 99 nucleotides glpR and yegS are separated by 81 nucleotides yegS and JDDGAC_28265 are separated by 405 nucleotides
JDDGAC_28250: gatD - galactitol-1-phosphate 5-dehydrogenase, at 5,412,820 to 5,413,860
gatD
JDDGAC_28255: glpR - transcriptional regulator, at 5,413,960 to 5,414,739
glpR
JDDGAC_28260: yegS - lipid kinase YegS, at 5,414,821 to 5,415,720
yegS
JDDGAC_28265: JDDGAC_28265 - Uncharacterized protein YegR, at 5,416,126 to 5,416,443
_28265
Position (kb) 5414
5415
5416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5413.990 kb on - strand at 5414.151 kb on + strand, within glpR at 5414.151 kb on + strand, within glpR at 5414.388 kb on + strand, within glpR at 5414.483 kb on + strand, within glpR at 5414.737 kb on + strand at 5414.740 kb on + strand at 5414.813 kb on + strand at 5414.814 kb on - strand at 5414.814 kb on - strand at 5414.949 kb on + strand, within yegS at 5415.201 kb on + strand, within yegS at 5415.230 kb on + strand, within yegS at 5415.230 kb on + strand, within yegS at 5415.231 kb on - strand, within yegS at 5415.313 kb on - strand, within yegS at 5415.315 kb on + strand, within yegS at 5415.316 kb on - strand, within yegS at 5415.346 kb on - strand, within yegS at 5415.350 kb on - strand, within yegS at 5415.390 kb on + strand, within yegS at 5415.511 kb on - strand, within yegS at 5415.645 kb on + strand at 5415.726 kb on + strand at 5415.750 kb on - strand at 5415.750 kb on - strand at 5415.915 kb on - strand at 5415.918 kb on + strand at 5415.948 kb on + strand at 5416.089 kb on + strand at 5416.261 kb on + strand, within JDDGAC_28265 at 5416.301 kb on + strand, within JDDGAC_28265 at 5416.403 kb on + strand, within JDDGAC_28265 at 5416.538 kb on + strand at 5416.539 kb on - strand at 5416.553 kb on + strand at 5416.595 kb on + strand at 5416.595 kb on + strand at 5416.595 kb on + strand at 5416.629 kb on - strand at 5416.661 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,413,990 - -0.9 5,414,151 + glpR JDDGAC_28255 0.24 -0.1 5,414,151 + glpR JDDGAC_28255 0.24 +0.5 5,414,388 + glpR JDDGAC_28255 0.55 -0.1 5,414,483 + glpR JDDGAC_28255 0.67 -1.7 5,414,737 + +0.4 5,414,740 + -0.2 5,414,813 + +1.0 5,414,814 - -1.1 5,414,814 - -0.7 5,414,949 + yegS JDDGAC_28260 0.14 -1.1 5,415,201 + yegS JDDGAC_28260 0.42 +0.5 5,415,230 + yegS JDDGAC_28260 0.45 -1.0 5,415,230 + yegS JDDGAC_28260 0.45 -2.4 5,415,231 - yegS JDDGAC_28260 0.46 +0.4 5,415,313 - yegS JDDGAC_28260 0.55 -0.2 5,415,315 + yegS JDDGAC_28260 0.55 -2.0 5,415,316 - yegS JDDGAC_28260 0.55 -0.7 5,415,346 - yegS JDDGAC_28260 0.58 +0.3 5,415,350 - yegS JDDGAC_28260 0.59 -0.2 5,415,390 + yegS JDDGAC_28260 0.63 +0.5 5,415,511 - yegS JDDGAC_28260 0.77 +0.1 5,415,645 + -1.7 5,415,726 + -0.4 5,415,750 - -0.9 5,415,750 - +0.5 5,415,915 - +0.7 5,415,918 + +0.1 5,415,948 + +0.4 5,416,089 + +0.4 5,416,261 + JDDGAC_28265 0.42 +0.2 5,416,301 + JDDGAC_28265 0.55 -1.4 5,416,403 + JDDGAC_28265 0.87 -1.8 5,416,538 + +1.1 5,416,539 - +0.3 5,416,553 + -0.1 5,416,595 + +2.0 5,416,595 + +0.5 5,416,595 + -0.5 5,416,629 - -0.1 5,416,661 + +0.1
Or see this region's nucleotide sequence