Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_26560 and smrB are separated by 170 nucleotides smrB and prmB are separated by 165 nucleotides prmB and aroC are separated by 34 nucleotides
JDDGAC_26560: JDDGAC_26560 - DUF2544 domain-containing protein, at 5,085,647 to 5,086,489
_26560
JDDGAC_26565: smrB - endonuclease SmrB, at 5,086,660 to 5,087,211
smrB
JDDGAC_26570: prmB - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 5,087,377 to 5,088,309
prmB
JDDGAC_26575: aroC - chorismate synthase, at 5,088,344 to 5,089,429
aroC
Position (kb) 5087
5088
5089 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5086.402 kb on - strand, within JDDGAC_26560 at 5086.416 kb on + strand at 5086.416 kb on + strand at 5086.426 kb on + strand at 5086.454 kb on - strand at 5086.469 kb on + strand at 5086.470 kb on - strand at 5086.473 kb on + strand at 5086.487 kb on + strand at 5086.487 kb on + strand at 5086.728 kb on - strand, within smrB at 5086.801 kb on + strand, within smrB at 5086.801 kb on + strand, within smrB at 5086.801 kb on + strand, within smrB at 5086.802 kb on - strand, within smrB at 5086.802 kb on - strand, within smrB at 5086.802 kb on - strand, within smrB at 5086.802 kb on - strand, within smrB at 5086.802 kb on - strand, within smrB at 5086.803 kb on + strand, within smrB at 5086.803 kb on + strand, within smrB at 5086.804 kb on - strand, within smrB at 5086.804 kb on - strand, within smrB at 5086.991 kb on + strand, within smrB at 5086.991 kb on + strand, within smrB at 5086.991 kb on + strand, within smrB at 5086.992 kb on - strand, within smrB at 5086.992 kb on - strand, within smrB at 5086.992 kb on - strand, within smrB at 5086.992 kb on - strand, within smrB at 5087.014 kb on + strand, within smrB at 5087.014 kb on + strand, within smrB at 5087.015 kb on - strand, within smrB at 5087.042 kb on + strand, within smrB at 5087.191 kb on - strand at 5087.214 kb on - strand at 5087.238 kb on + strand at 5087.281 kb on - strand at 5087.316 kb on - strand at 5087.316 kb on - strand at 5087.374 kb on + strand at 5087.470 kb on - strand at 5087.470 kb on - strand at 5087.513 kb on + strand, within prmB at 5087.646 kb on - strand, within prmB at 5087.650 kb on + strand, within prmB at 5087.650 kb on + strand, within prmB at 5087.781 kb on + strand, within prmB at 5087.782 kb on - strand, within prmB at 5087.786 kb on + strand, within prmB at 5087.787 kb on - strand, within prmB at 5087.790 kb on + strand, within prmB at 5087.790 kb on + strand, within prmB at 5087.796 kb on + strand, within prmB at 5087.830 kb on + strand, within prmB at 5087.861 kb on + strand, within prmB at 5087.861 kb on + strand, within prmB at 5087.862 kb on - strand, within prmB at 5087.862 kb on - strand, within prmB at 5087.865 kb on + strand, within prmB at 5087.865 kb on + strand, within prmB at 5087.866 kb on - strand, within prmB at 5087.978 kb on - strand, within prmB at 5088.004 kb on + strand, within prmB at 5088.193 kb on + strand, within prmB at 5088.249 kb on + strand at 5088.300 kb on + strand at 5088.307 kb on + strand at 5088.508 kb on + strand, within aroC at 5088.568 kb on + strand, within aroC at 5088.568 kb on + strand, within aroC at 5088.675 kb on - strand, within aroC at 5088.909 kb on + strand, within aroC at 5088.909 kb on + strand, within aroC at 5088.910 kb on - strand, within aroC at 5089.234 kb on + strand, within aroC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,086,402 - JDDGAC_26560 0.90 +1.7 5,086,416 + -0.2 5,086,416 + +0.1 5,086,426 + -2.7 5,086,454 - -1.6 5,086,469 + +0.0 5,086,470 - -0.0 5,086,473 + +1.3 5,086,487 + +0.1 5,086,487 + +0.3 5,086,728 - smrB JDDGAC_26565 0.12 +0.2 5,086,801 + smrB JDDGAC_26565 0.26 -0.0 5,086,801 + smrB JDDGAC_26565 0.26 -1.0 5,086,801 + smrB JDDGAC_26565 0.26 +1.6 5,086,802 - smrB JDDGAC_26565 0.26 +0.3 5,086,802 - smrB JDDGAC_26565 0.26 -0.4 5,086,802 - smrB JDDGAC_26565 0.26 -0.8 5,086,802 - smrB JDDGAC_26565 0.26 +0.8 5,086,802 - smrB JDDGAC_26565 0.26 +0.6 5,086,803 + smrB JDDGAC_26565 0.26 -0.1 5,086,803 + smrB JDDGAC_26565 0.26 +0.2 5,086,804 - smrB JDDGAC_26565 0.26 +0.4 5,086,804 - smrB JDDGAC_26565 0.26 -0.1 5,086,991 + smrB JDDGAC_26565 0.60 +0.6 5,086,991 + smrB JDDGAC_26565 0.60 +0.4 5,086,991 + smrB JDDGAC_26565 0.60 -0.1 5,086,992 - smrB JDDGAC_26565 0.60 +1.0 5,086,992 - smrB JDDGAC_26565 0.60 -1.9 5,086,992 - smrB JDDGAC_26565 0.60 -0.2 5,086,992 - smrB JDDGAC_26565 0.60 +0.3 5,087,014 + smrB JDDGAC_26565 0.64 -0.1 5,087,014 + smrB JDDGAC_26565 0.64 -0.8 5,087,015 - smrB JDDGAC_26565 0.64 -0.6 5,087,042 + smrB JDDGAC_26565 0.69 -1.1 5,087,191 - -1.2 5,087,214 - +0.2 5,087,238 + -3.1 5,087,281 - +0.0 5,087,316 - +0.6 5,087,316 - -1.6 5,087,374 + +0.1 5,087,470 - -2.1 5,087,470 - -1.4 5,087,513 + prmB JDDGAC_26570 0.15 -1.1 5,087,646 - prmB JDDGAC_26570 0.29 -2.1 5,087,650 + prmB JDDGAC_26570 0.29 -0.4 5,087,650 + prmB JDDGAC_26570 0.29 +0.1 5,087,781 + prmB JDDGAC_26570 0.43 -1.0 5,087,782 - prmB JDDGAC_26570 0.43 -1.2 5,087,786 + prmB JDDGAC_26570 0.44 -1.9 5,087,787 - prmB JDDGAC_26570 0.44 -1.0 5,087,790 + prmB JDDGAC_26570 0.44 -2.6 5,087,790 + prmB JDDGAC_26570 0.44 -1.9 5,087,796 + prmB JDDGAC_26570 0.45 -2.6 5,087,830 + prmB JDDGAC_26570 0.49 -0.8 5,087,861 + prmB JDDGAC_26570 0.52 -1.3 5,087,861 + prmB JDDGAC_26570 0.52 -1.3 5,087,862 - prmB JDDGAC_26570 0.52 -3.0 5,087,862 - prmB JDDGAC_26570 0.52 -2.6 5,087,865 + prmB JDDGAC_26570 0.52 -1.1 5,087,865 + prmB JDDGAC_26570 0.52 -0.2 5,087,866 - prmB JDDGAC_26570 0.52 -1.5 5,087,978 - prmB JDDGAC_26570 0.64 -2.5 5,088,004 + prmB JDDGAC_26570 0.67 +0.6 5,088,193 + prmB JDDGAC_26570 0.87 -1.6 5,088,249 + +0.2 5,088,300 + +0.4 5,088,307 + +0.4 5,088,508 + aroC JDDGAC_26575 0.15 -1.4 5,088,568 + aroC JDDGAC_26575 0.21 -0.6 5,088,568 + aroC JDDGAC_26575 0.21 -1.9 5,088,675 - aroC JDDGAC_26575 0.30 -2.7 5,088,909 + aroC JDDGAC_26575 0.52 +0.3 5,088,909 + aroC JDDGAC_26575 0.52 -3.3 5,088,910 - aroC JDDGAC_26575 0.52 -2.0 5,089,234 + aroC JDDGAC_26575 0.82 -2.3
Or see this region's nucleotide sequence