Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra8 and JDDGAC_24675 are separated by 244 nucleotides JDDGAC_24675 and JDDGAC_24680 overlap by 8 nucleotides JDDGAC_24680 and JDDGAC_24685 overlap by 26 nucleotides
JDDGAC_24670: tra8 - IS30 family transposase, at 4,729,436 to 4,730,191
tra8
JDDGAC_24675: JDDGAC_24675 - hypothetical protein, at 4,730,436 to 4,730,552
_24675
JDDGAC_24680: JDDGAC_24680 - endonuclease, at 4,730,545 to 4,731,111
_24680
JDDGAC_24685: JDDGAC_24685 - protein NinG, at 4,731,086 to 4,731,697
_24685
Position (kb) 4730
4731 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4729.452 kb on - strand at 4729.452 kb on - strand at 4729.469 kb on - strand at 4729.479 kb on - strand at 4730.269 kb on - strand at 4730.483 kb on + strand, within JDDGAC_24675 at 4730.572 kb on - strand at 4730.675 kb on + strand, within JDDGAC_24680 at 4730.836 kb on - strand, within JDDGAC_24680 at 4730.982 kb on + strand, within JDDGAC_24680 at 4731.023 kb on + strand, within JDDGAC_24680 at 4731.023 kb on + strand, within JDDGAC_24680 at 4731.045 kb on + strand, within JDDGAC_24680 at 4731.046 kb on - strand, within JDDGAC_24680 at 4731.049 kb on + strand, within JDDGAC_24680 at 4731.049 kb on + strand, within JDDGAC_24680 at 4731.050 kb on - strand, within JDDGAC_24680 at 4731.050 kb on - strand, within JDDGAC_24680 at 4731.052 kb on + strand, within JDDGAC_24680 at 4731.160 kb on + strand, within JDDGAC_24685
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 4,729,452 - -0.1 4,729,452 - +0.3 4,729,469 - -0.9 4,729,479 - -1.8 4,730,269 - -0.4 4,730,483 + JDDGAC_24675 0.40 -1.2 4,730,572 - -2.9 4,730,675 + JDDGAC_24680 0.23 -1.4 4,730,836 - JDDGAC_24680 0.51 +0.4 4,730,982 + JDDGAC_24680 0.77 -2.6 4,731,023 + JDDGAC_24680 0.84 +0.7 4,731,023 + JDDGAC_24680 0.84 +0.4 4,731,045 + JDDGAC_24680 0.88 +0.8 4,731,046 - JDDGAC_24680 0.88 -1.9 4,731,049 + JDDGAC_24680 0.89 -1.0 4,731,049 + JDDGAC_24680 0.89 -0.2 4,731,050 - JDDGAC_24680 0.89 +0.1 4,731,050 - JDDGAC_24680 0.89 -2.8 4,731,052 + JDDGAC_24680 0.89 -0.9 4,731,160 + JDDGAC_24685 0.12 +0.0
Or see this region's nucleotide sequence