Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cas6e and cas1e overlap by 4 nucleotides cas1e and cas2e overlap by 4 nucleotides cas2e and iap are separated by 389 nucleotides
JDDGAC_24085: cas6e - type I-E CRISPR-associated protein Cas6/Cse3/CasE, at 4,620,037 to 4,620,687
cas6e
JDDGAC_24090: cas1e - type I-E CRISPR-associated endonuclease Cas1e, at 4,620,684 to 4,621,607
cas1e
JDDGAC_24095: cas2e - type I-E CRISPR-associated endoribonuclease Cas2e, at 4,621,604 to 4,621,897
cas2e
JDDGAC_24100: iap - alkaline phosphatase isozyme conversion aminopeptidase, at 4,622,287 to 4,623,324
iap
Position (kb) 4621
4622 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4620.731 kb on + strand at 4620.732 kb on - strand at 4620.940 kb on - strand, within cas1e at 4620.975 kb on - strand, within cas1e at 4620.979 kb on + strand, within cas1e at 4620.979 kb on + strand, within cas1e at 4621.048 kb on + strand, within cas1e at 4621.128 kb on + strand, within cas1e at 4621.128 kb on + strand, within cas1e at 4621.128 kb on + strand, within cas1e at 4621.128 kb on + strand, within cas1e at 4621.129 kb on - strand, within cas1e at 4621.129 kb on - strand, within cas1e at 4621.135 kb on + strand, within cas1e at 4621.149 kb on + strand, within cas1e at 4621.149 kb on + strand, within cas1e at 4621.150 kb on - strand, within cas1e at 4621.176 kb on + strand, within cas1e at 4621.177 kb on - strand, within cas1e at 4621.267 kb on + strand, within cas1e at 4621.268 kb on - strand, within cas1e at 4621.301 kb on + strand, within cas1e at 4621.339 kb on + strand, within cas1e at 4621.457 kb on + strand, within cas1e at 4621.458 kb on - strand, within cas1e at 4621.484 kb on - strand, within cas1e at 4621.647 kb on + strand, within cas2e at 4621.648 kb on - strand, within cas2e at 4621.694 kb on + strand, within cas2e at 4621.694 kb on + strand, within cas2e at 4621.694 kb on + strand, within cas2e at 4621.695 kb on - strand, within cas2e at 4621.695 kb on - strand, within cas2e at 4621.695 kb on - strand, within cas2e at 4621.705 kb on + strand, within cas2e at 4621.705 kb on + strand, within cas2e at 4621.706 kb on - strand, within cas2e at 4621.918 kb on - strand at 4621.942 kb on + strand at 4621.942 kb on + strand at 4621.943 kb on - strand at 4621.943 kb on - strand at 4621.984 kb on + strand at 4621.984 kb on + strand at 4621.985 kb on - strand at 4622.088 kb on + strand at 4622.089 kb on - strand at 4622.237 kb on - strand at 4622.237 kb on - strand at 4622.257 kb on + strand at 4622.257 kb on + strand at 4622.335 kb on - strand at 4622.335 kb on - strand at 4622.357 kb on - strand at 4622.357 kb on - strand at 4622.357 kb on - strand at 4622.357 kb on - strand at 4622.357 kb on - strand at 4622.405 kb on - strand, within iap at 4622.419 kb on - strand, within iap at 4622.544 kb on + strand, within iap at 4622.545 kb on - strand, within iap at 4622.613 kb on + strand, within iap at 4622.707 kb on + strand, within iap at 4622.708 kb on - strand, within iap at 4622.708 kb on - strand, within iap at 4622.845 kb on - strand, within iap
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 4,620,731 + +0.3 4,620,732 - -0.1 4,620,940 - cas1e JDDGAC_24090 0.28 +0.3 4,620,975 - cas1e JDDGAC_24090 0.31 -0.3 4,620,979 + cas1e JDDGAC_24090 0.32 -2.6 4,620,979 + cas1e JDDGAC_24090 0.32 -0.7 4,621,048 + cas1e JDDGAC_24090 0.39 +1.7 4,621,128 + cas1e JDDGAC_24090 0.48 -1.8 4,621,128 + cas1e JDDGAC_24090 0.48 -3.0 4,621,128 + cas1e JDDGAC_24090 0.48 +1.5 4,621,128 + cas1e JDDGAC_24090 0.48 -1.2 4,621,129 - cas1e JDDGAC_24090 0.48 +0.0 4,621,129 - cas1e JDDGAC_24090 0.48 +0.4 4,621,135 + cas1e JDDGAC_24090 0.49 -1.0 4,621,149 + cas1e JDDGAC_24090 0.50 +0.3 4,621,149 + cas1e JDDGAC_24090 0.50 +0.3 4,621,150 - cas1e JDDGAC_24090 0.50 -1.5 4,621,176 + cas1e JDDGAC_24090 0.53 -0.1 4,621,177 - cas1e JDDGAC_24090 0.53 -0.2 4,621,267 + cas1e JDDGAC_24090 0.63 +0.0 4,621,268 - cas1e JDDGAC_24090 0.63 -1.2 4,621,301 + cas1e JDDGAC_24090 0.67 +0.1 4,621,339 + cas1e JDDGAC_24090 0.71 +0.2 4,621,457 + cas1e JDDGAC_24090 0.84 +0.9 4,621,458 - cas1e JDDGAC_24090 0.84 +0.5 4,621,484 - cas1e JDDGAC_24090 0.87 -0.8 4,621,647 + cas2e JDDGAC_24095 0.15 +0.4 4,621,648 - cas2e JDDGAC_24095 0.15 +0.3 4,621,694 + cas2e JDDGAC_24095 0.31 +0.1 4,621,694 + cas2e JDDGAC_24095 0.31 +0.9 4,621,694 + cas2e JDDGAC_24095 0.31 +0.8 4,621,695 - cas2e JDDGAC_24095 0.31 -0.0 4,621,695 - cas2e JDDGAC_24095 0.31 +1.1 4,621,695 - cas2e JDDGAC_24095 0.31 +0.4 4,621,705 + cas2e JDDGAC_24095 0.34 -0.1 4,621,705 + cas2e JDDGAC_24095 0.34 +0.3 4,621,706 - cas2e JDDGAC_24095 0.35 +0.3 4,621,918 - -0.1 4,621,942 + +0.7 4,621,942 + +0.2 4,621,943 - +0.6 4,621,943 - -0.2 4,621,984 + +0.1 4,621,984 + -2.2 4,621,985 - -0.3 4,622,088 + +0.5 4,622,089 - +0.0 4,622,237 - +0.2 4,622,237 - +0.1 4,622,257 + -0.4 4,622,257 + -1.6 4,622,335 - +0.5 4,622,335 - -1.6 4,622,357 - +0.6 4,622,357 - +0.1 4,622,357 - +1.2 4,622,357 - -2.5 4,622,357 - -2.0 4,622,405 - iap JDDGAC_24100 0.11 +0.3 4,622,419 - iap JDDGAC_24100 0.13 +0.8 4,622,544 + iap JDDGAC_24100 0.25 +0.1 4,622,545 - iap JDDGAC_24100 0.25 -0.2 4,622,613 + iap JDDGAC_24100 0.31 +0.4 4,622,707 + iap JDDGAC_24100 0.40 +0.8 4,622,708 - iap JDDGAC_24100 0.41 +0.7 4,622,708 - iap JDDGAC_24100 0.41 +2.1 4,622,845 - iap JDDGAC_24100 0.54 -0.7
Or see this region's nucleotide sequence