Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_21900 and JDDGAC_21905 are separated by 30 nucleotides JDDGAC_21905 and agaD are separated by 54 nucleotides agaD and agaC overlap by 11 nucleotides agaC and agaB are separated by 212 nucleotides
JDDGAC_21900: JDDGAC_21900 - galactosamine-6-phosphate isomerase, at 4,189,518 to 4,190,027
_21900
JDDGAC_21905: JDDGAC_21905 - Putative galactosamine-6-phosphate isomerase, at 4,190,058 to 4,190,219
_21905
JDDGAC_21910: agaD - PTS galactosamine transporter subunit IID, at 4,190,274 to 4,191,065
agaD
JDDGAC_21915: agaC - PTS galactosamine transporter subunit IIC, at 4,191,055 to 4,191,684
agaC
JDDGAC_21920: agaB - PTS galactosamine transporter subunit IIB, at 4,191,897 to 4,192,373
agaB
Position (kb) 4190
4191
4192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4189.523 kb on + strand at 4189.526 kb on + strand at 4189.589 kb on + strand, within JDDGAC_21900 at 4189.642 kb on - strand, within JDDGAC_21900 at 4189.760 kb on + strand, within JDDGAC_21900 at 4189.837 kb on - strand, within JDDGAC_21900 at 4189.897 kb on - strand, within JDDGAC_21900 at 4189.897 kb on - strand, within JDDGAC_21900 at 4189.983 kb on - strand at 4190.081 kb on - strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.086 kb on + strand, within JDDGAC_21905 at 4190.087 kb on - strand, within JDDGAC_21905 at 4190.158 kb on - strand, within JDDGAC_21905 at 4190.181 kb on + strand, within JDDGAC_21905 at 4190.193 kb on - strand, within JDDGAC_21905 at 4190.234 kb on + strand at 4190.234 kb on + strand at 4190.303 kb on + strand at 4190.368 kb on + strand, within agaD at 4190.368 kb on + strand, within agaD at 4190.368 kb on + strand, within agaD at 4190.369 kb on - strand, within agaD at 4190.369 kb on - strand, within agaD at 4190.384 kb on - strand, within agaD at 4190.384 kb on - strand, within agaD at 4190.384 kb on - strand, within agaD at 4190.451 kb on - strand, within agaD at 4190.480 kb on + strand, within agaD at 4190.481 kb on - strand, within agaD at 4190.481 kb on - strand, within agaD at 4190.483 kb on + strand, within agaD at 4190.484 kb on - strand, within agaD at 4190.491 kb on + strand, within agaD at 4190.491 kb on + strand, within agaD at 4190.491 kb on + strand, within agaD at 4190.492 kb on - strand, within agaD at 4190.492 kb on - strand, within agaD at 4190.636 kb on + strand, within agaD at 4190.835 kb on + strand, within agaD at 4190.870 kb on + strand, within agaD at 4190.907 kb on + strand, within agaD at 4190.907 kb on + strand, within agaD at 4190.927 kb on + strand, within agaD at 4190.927 kb on + strand, within agaD at 4190.928 kb on - strand, within agaD at 4190.929 kb on + strand, within agaD at 4190.964 kb on - strand, within agaD at 4190.990 kb on - strand at 4190.993 kb on + strand at 4190.993 kb on + strand at 4191.147 kb on - strand, within agaC at 4191.147 kb on - strand, within agaC at 4191.204 kb on - strand, within agaC at 4191.243 kb on - strand, within agaC at 4191.243 kb on - strand, within agaC at 4191.243 kb on - strand, within agaC at 4191.243 kb on - strand, within agaC at 4191.382 kb on - strand, within agaC at 4191.439 kb on - strand, within agaC at 4191.495 kb on + strand, within agaC at 4191.496 kb on - strand, within agaC at 4191.515 kb on + strand, within agaC at 4191.516 kb on - strand, within agaC at 4191.533 kb on + strand, within agaC at 4191.533 kb on + strand, within agaC at 4191.542 kb on - strand, within agaC at 4191.542 kb on - strand, within agaC at 4191.707 kb on - strand at 4191.975 kb on + strand, within agaB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 4,189,523 + +0.2 4,189,526 + -0.3 4,189,589 + JDDGAC_21900 0.14 +0.7 4,189,642 - JDDGAC_21900 0.24 -0.1 4,189,760 + JDDGAC_21900 0.47 -1.2 4,189,837 - JDDGAC_21900 0.63 -0.4 4,189,897 - JDDGAC_21900 0.74 -0.6 4,189,897 - JDDGAC_21900 0.74 -0.1 4,189,983 - +0.4 4,190,081 - JDDGAC_21905 0.14 +0.8 4,190,086 + JDDGAC_21905 0.17 +0.3 4,190,086 + JDDGAC_21905 0.17 +0.7 4,190,086 + JDDGAC_21905 0.17 -1.6 4,190,086 + JDDGAC_21905 0.17 -0.2 4,190,086 + JDDGAC_21905 0.17 +0.1 4,190,086 + JDDGAC_21905 0.17 -0.2 4,190,086 + JDDGAC_21905 0.17 -0.4 4,190,087 - JDDGAC_21905 0.18 +0.1 4,190,158 - JDDGAC_21905 0.62 +1.5 4,190,181 + JDDGAC_21905 0.76 +0.9 4,190,193 - JDDGAC_21905 0.83 -0.1 4,190,234 + -0.9 4,190,234 + -1.3 4,190,303 + +0.6 4,190,368 + agaD JDDGAC_21910 0.12 +1.4 4,190,368 + agaD JDDGAC_21910 0.12 -0.9 4,190,368 + agaD JDDGAC_21910 0.12 +0.0 4,190,369 - agaD JDDGAC_21910 0.12 -1.0 4,190,369 - agaD JDDGAC_21910 0.12 +0.1 4,190,384 - agaD JDDGAC_21910 0.14 -0.1 4,190,384 - agaD JDDGAC_21910 0.14 +1.7 4,190,384 - agaD JDDGAC_21910 0.14 +1.8 4,190,451 - agaD JDDGAC_21910 0.22 -1.9 4,190,480 + agaD JDDGAC_21910 0.26 +0.4 4,190,481 - agaD JDDGAC_21910 0.26 -0.5 4,190,481 - agaD JDDGAC_21910 0.26 -1.3 4,190,483 + agaD JDDGAC_21910 0.26 +0.3 4,190,484 - agaD JDDGAC_21910 0.27 +0.1 4,190,491 + agaD JDDGAC_21910 0.27 +0.4 4,190,491 + agaD JDDGAC_21910 0.27 -0.0 4,190,491 + agaD JDDGAC_21910 0.27 -1.0 4,190,492 - agaD JDDGAC_21910 0.28 -1.4 4,190,492 - agaD JDDGAC_21910 0.28 -1.2 4,190,636 + agaD JDDGAC_21910 0.46 -1.0 4,190,835 + agaD JDDGAC_21910 0.71 +0.9 4,190,870 + agaD JDDGAC_21910 0.75 -0.9 4,190,907 + agaD JDDGAC_21910 0.80 +0.2 4,190,907 + agaD JDDGAC_21910 0.80 +1.7 4,190,927 + agaD JDDGAC_21910 0.82 +0.3 4,190,927 + agaD JDDGAC_21910 0.82 +0.9 4,190,928 - agaD JDDGAC_21910 0.83 +1.1 4,190,929 + agaD JDDGAC_21910 0.83 -0.8 4,190,964 - agaD JDDGAC_21910 0.87 -0.1 4,190,990 - -2.5 4,190,993 + -0.3 4,190,993 + +0.5 4,191,147 - agaC JDDGAC_21915 0.15 +0.5 4,191,147 - agaC JDDGAC_21915 0.15 -0.2 4,191,204 - agaC JDDGAC_21915 0.24 +0.3 4,191,243 - agaC JDDGAC_21915 0.30 -1.6 4,191,243 - agaC JDDGAC_21915 0.30 +1.8 4,191,243 - agaC JDDGAC_21915 0.30 -0.8 4,191,243 - agaC JDDGAC_21915 0.30 -1.0 4,191,382 - agaC JDDGAC_21915 0.52 +0.0 4,191,439 - agaC JDDGAC_21915 0.61 -0.1 4,191,495 + agaC JDDGAC_21915 0.70 -0.2 4,191,496 - agaC JDDGAC_21915 0.70 -0.8 4,191,515 + agaC JDDGAC_21915 0.73 +0.5 4,191,516 - agaC JDDGAC_21915 0.73 -1.0 4,191,533 + agaC JDDGAC_21915 0.76 +0.4 4,191,533 + agaC JDDGAC_21915 0.76 -0.6 4,191,542 - agaC JDDGAC_21915 0.77 -1.0 4,191,542 - agaC JDDGAC_21915 0.77 +0.2 4,191,707 - +0.0 4,191,975 + agaB JDDGAC_21920 0.16 -1.9
Or see this region's nucleotide sequence