Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14260

Experiment: WM_TP12

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmurE and ftsI overlap by 14 nucleotidesftsI and JDDGAC_14265 are separated by 15 nucleotidesJDDGAC_14265 and rsmH overlap by 4 nucleotides JDDGAC_14255: murE - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase, at 2,646,731 to 2,648,218 murE JDDGAC_14260: ftsI - peptidoglycan glycosyltransferase FtsI, at 2,648,205 to 2,649,971 ftsI JDDGAC_14265: JDDGAC_14265 - penicillin-binding protein PBP3 FtsI, at 2,649,987 to 2,650,352 _14265 JDDGAC_14270: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,650,349 to 2,651,290 rsmH Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -1 0 1at 2650.635 kb on - strand, within rsmHat 2650.635 kb on - strand, within rsmHat 2650.635 kb on - strand, within rsmH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
remove
2,650,635 - rsmH JDDGAC_14270 0.30 -1.0
2,650,635 - rsmH JDDGAC_14270 0.30 +0.2
2,650,635 - rsmH JDDGAC_14270 0.30 +1.0

Or see this region's nucleotide sequence