Strain Fitness in Escherichia coli ECRC98 around JDDGAC_13000

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_12990 and JDDGAC_12995 overlap by 1 nucleotidesJDDGAC_12995 and JDDGAC_13000 are separated by 30 nucleotidesJDDGAC_13000 and JDDGAC_13005 overlap by 8 nucleotidesJDDGAC_13005 and JDDGAC_13010 overlap by 1 nucleotides JDDGAC_12990: JDDGAC_12990 - hypothetical protein, at 2,409,671 to 2,410,237 _12990 JDDGAC_12995: JDDGAC_12995 - hypothetical protein, at 2,410,237 to 2,410,827 _12995 JDDGAC_13000: JDDGAC_13000 - AAA family ATPase, at 2,410,858 to 2,411,490 _13000 JDDGAC_13005: JDDGAC_13005 - ABC-three component (ABC-3C) system Middle Component 2, at 2,411,483 to 2,411,941 _13005 JDDGAC_13010: JDDGAC_13010 - Phage-associated protein, at 2,411,941 to 2,412,558 _13010 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -1 0 1at 2409.965 kb on + strand, within JDDGAC_12990at 2409.968 kb on - strand, within JDDGAC_12990at 2410.582 kb on + strand, within JDDGAC_12995at 2411.068 kb on + strand, within JDDGAC_13000at 2411.205 kb on - strand, within JDDGAC_13000at 2411.256 kb on + strand, within JDDGAC_13000at 2412.028 kb on + strand, within JDDGAC_13010

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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2,409,965 + JDDGAC_12990 0.52 +0.8
2,409,968 - JDDGAC_12990 0.52 -0.6
2,410,582 + JDDGAC_12995 0.58 +0.4
2,411,068 + JDDGAC_13000 0.33 -0.3
2,411,205 - JDDGAC_13000 0.55 +0.2
2,411,256 + JDDGAC_13000 0.63 -1.3
2,412,028 + JDDGAC_13010 0.14 -0.1

Or see this region's nucleotide sequence