Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt citF and citX are separated by 3 nucleotides citX and citG overlap by 26 nucleotides citG and citT are separated by 50 nucleotides
JDDGAC_11105: citF - citrate lyase subunit alpha, at 1,994,311 to 1,995,843
citF
JDDGAC_11110: citX - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 1,995,847 to 1,996,398
citX
JDDGAC_11115: citG - triphosphoribosyl-dephospho-CoA synthase CitG, at 1,996,373 to 1,997,251
citG
JDDGAC_11120: citT - citrate/succinate antiporter CitT, at 1,997,302 to 1,998,765
citT
Position (kb) 1996
1997
1998 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1995.413 kb on + strand, within citF at 1995.842 kb on - strand at 1995.976 kb on - strand, within citX at 1996.185 kb on + strand, within citX at 1996.185 kb on + strand, within citX at 1996.186 kb on - strand, within citX at 1996.258 kb on + strand, within citX at 1996.606 kb on + strand, within citG at 1996.675 kb on + strand, within citG at 1996.676 kb on - strand, within citG at 1996.676 kb on - strand, within citG at 1996.676 kb on - strand, within citG at 1996.676 kb on - strand, within citG at 1996.676 kb on - strand, within citG at 1996.698 kb on + strand, within citG at 1996.847 kb on - strand, within citG at 1996.847 kb on - strand, within citG at 1996.852 kb on + strand, within citG at 1996.883 kb on + strand, within citG at 1996.884 kb on - strand, within citG at 1996.989 kb on + strand, within citG at 1996.990 kb on - strand, within citG at 1997.014 kb on + strand, within citG at 1997.015 kb on - strand, within citG at 1997.015 kb on - strand, within citG at 1997.015 kb on - strand, within citG at 1997.227 kb on + strand at 1997.227 kb on + strand at 1997.302 kb on - strand at 1997.302 kb on - strand at 1997.322 kb on + strand at 1997.323 kb on - strand at 1997.370 kb on + strand at 1997.370 kb on + strand at 1997.410 kb on + strand at 1997.411 kb on - strand at 1997.481 kb on + strand, within citT at 1997.494 kb on - strand, within citT at 1997.515 kb on + strand, within citT at 1997.540 kb on + strand, within citT at 1997.607 kb on + strand, within citT at 1997.635 kb on - strand, within citT at 1997.766 kb on + strand, within citT at 1997.835 kb on + strand, within citT at 1997.868 kb on + strand, within citT at 1997.869 kb on - strand, within citT at 1997.901 kb on + strand, within citT at 1997.902 kb on - strand, within citT at 1997.902 kb on - strand, within citT at 1997.904 kb on + strand, within citT at 1998.067 kb on + strand, within citT at 1998.068 kb on - strand, within citT at 1998.068 kb on - strand, within citT at 1998.131 kb on + strand, within citT at 1998.182 kb on + strand, within citT at 1998.182 kb on + strand, within citT at 1998.183 kb on - strand, within citT at 1998.206 kb on + strand, within citT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 1,995,413 + citF JDDGAC_11105 0.72 +0.2 1,995,842 - -0.2 1,995,976 - citX JDDGAC_11110 0.23 +0.0 1,996,185 + citX JDDGAC_11110 0.61 +0.2 1,996,185 + citX JDDGAC_11110 0.61 -0.2 1,996,186 - citX JDDGAC_11110 0.61 -1.3 1,996,258 + citX JDDGAC_11110 0.74 +0.0 1,996,606 + citG JDDGAC_11115 0.27 -0.7 1,996,675 + citG JDDGAC_11115 0.34 -2.0 1,996,676 - citG JDDGAC_11115 0.34 -0.1 1,996,676 - citG JDDGAC_11115 0.34 -2.1 1,996,676 - citG JDDGAC_11115 0.34 -1.5 1,996,676 - citG JDDGAC_11115 0.34 +0.9 1,996,676 - citG JDDGAC_11115 0.34 +0.3 1,996,698 + citG JDDGAC_11115 0.37 -0.0 1,996,847 - citG JDDGAC_11115 0.54 +0.9 1,996,847 - citG JDDGAC_11115 0.54 -0.8 1,996,852 + citG JDDGAC_11115 0.54 +0.1 1,996,883 + citG JDDGAC_11115 0.58 +0.7 1,996,884 - citG JDDGAC_11115 0.58 +3.9 1,996,989 + citG JDDGAC_11115 0.70 -0.2 1,996,990 - citG JDDGAC_11115 0.70 -1.7 1,997,014 + citG JDDGAC_11115 0.73 +0.0 1,997,015 - citG JDDGAC_11115 0.73 +0.4 1,997,015 - citG JDDGAC_11115 0.73 -1.1 1,997,015 - citG JDDGAC_11115 0.73 -0.1 1,997,227 + +0.4 1,997,227 + +0.2 1,997,302 - +0.8 1,997,302 - -0.0 1,997,322 + -1.0 1,997,323 - -0.9 1,997,370 + +0.5 1,997,370 + -0.2 1,997,410 + -2.0 1,997,411 - -1.1 1,997,481 + citT JDDGAC_11120 0.12 +0.8 1,997,494 - citT JDDGAC_11120 0.13 -0.5 1,997,515 + citT JDDGAC_11120 0.15 -0.8 1,997,540 + citT JDDGAC_11120 0.16 +0.3 1,997,607 + citT JDDGAC_11120 0.21 +0.2 1,997,635 - citT JDDGAC_11120 0.23 +0.0 1,997,766 + citT JDDGAC_11120 0.32 -0.5 1,997,835 + citT JDDGAC_11120 0.36 +0.6 1,997,868 + citT JDDGAC_11120 0.39 -0.3 1,997,869 - citT JDDGAC_11120 0.39 +0.1 1,997,901 + citT JDDGAC_11120 0.41 +0.2 1,997,902 - citT JDDGAC_11120 0.41 +0.2 1,997,902 - citT JDDGAC_11120 0.41 -0.9 1,997,904 + citT JDDGAC_11120 0.41 -0.1 1,998,067 + citT JDDGAC_11120 0.52 -0.7 1,998,068 - citT JDDGAC_11120 0.52 -0.0 1,998,068 - citT JDDGAC_11120 0.52 -0.4 1,998,131 + citT JDDGAC_11120 0.57 -0.2 1,998,182 + citT JDDGAC_11120 0.60 +0.5 1,998,182 + citT JDDGAC_11120 0.60 -1.1 1,998,183 - citT JDDGAC_11120 0.60 +0.2 1,998,206 + citT JDDGAC_11120 0.62 -0.8
Or see this region's nucleotide sequence