Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10880

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeZ and ybeY overlap by 4 nucleotidesybeY and corC are separated by 89 nucleotidescorC and lnt are separated by 24 nucleotides JDDGAC_10875: ybeZ - PhoH-like protein, at 1,951,658 to 1,952,737 ybeZ JDDGAC_10880: ybeY - rRNA maturation RNase YbeY, at 1,952,734 to 1,953,201 ybeY JDDGAC_10885: corC - CNNM family magnesium/cobalt transport protein CorC, at 1,953,291 to 1,954,169 corC JDDGAC_10890: lnt - apolipoprotein N-acyltransferase, at 1,954,194 to 1,955,732 lnt Position (kb) 1952 1953 1954Strain fitness (log2 ratio) -2 -1 0 1at 1951.895 kb on + strand, within ybeZat 1951.895 kb on + strand, within ybeZat 1952.046 kb on + strand, within ybeZat 1952.046 kb on + strand, within ybeZat 1952.144 kb on + strand, within ybeZat 1952.259 kb on + strand, within ybeZat 1952.392 kb on + strand, within ybeZat 1952.410 kb on + strand, within ybeZat 1952.410 kb on + strand, within ybeZat 1952.437 kb on + strand, within ybeZat 1952.530 kb on + strand, within ybeZat 1952.533 kb on + strand, within ybeZat 1952.536 kb on + strand, within ybeZat 1952.547 kb on + strand, within ybeZat 1953.263 kb on + strandat 1953.449 kb on + strand, within corCat 1954.167 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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1,951,895 + ybeZ JDDGAC_10875 0.22 +0.4
1,951,895 + ybeZ JDDGAC_10875 0.22 -0.3
1,952,046 + ybeZ JDDGAC_10875 0.36 -2.5
1,952,046 + ybeZ JDDGAC_10875 0.36 +0.7
1,952,144 + ybeZ JDDGAC_10875 0.45 -0.0
1,952,259 + ybeZ JDDGAC_10875 0.56 +0.1
1,952,392 + ybeZ JDDGAC_10875 0.68 -0.0
1,952,410 + ybeZ JDDGAC_10875 0.70 -1.0
1,952,410 + ybeZ JDDGAC_10875 0.70 +1.1
1,952,437 + ybeZ JDDGAC_10875 0.72 -1.2
1,952,530 + ybeZ JDDGAC_10875 0.81 +1.2
1,952,533 + ybeZ JDDGAC_10875 0.81 +0.0
1,952,536 + ybeZ JDDGAC_10875 0.81 -1.8
1,952,547 + ybeZ JDDGAC_10875 0.82 +1.5
1,953,263 + +0.9
1,953,449 + corC JDDGAC_10885 0.18 +0.6
1,954,167 + +0.9

Or see this region's nucleotide sequence