Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_07850 and ureG are separated by 255 nucleotides ureG and ureF are separated by 11 nucleotides ureF and ureE are separated by 0 nucleotides ureE and ureC are separated by 9 nucleotides
JDDGAC_07850: JDDGAC_07850 - Transposase, at 1,358,146 to 1,358,487
_07850
JDDGAC_07855: ureG - urease accessory protein UreG, at 1,358,743 to 1,359,360
ureG
JDDGAC_07860: ureF - Urease accessory protein UreF, at 1,359,372 to 1,360,046
ureF
JDDGAC_07865: ureE - urease accessory protein UreE, at 1,360,047 to 1,360,511
ureE
JDDGAC_07870: ureC - urease subunit alpha, at 1,360,521 to 1,362,224
ureC
Position (kb) 1359
1360
1361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1358.391 kb on + strand, within JDDGAC_07850 at 1358.391 kb on + strand, within JDDGAC_07850 at 1358.392 kb on - strand, within JDDGAC_07850 at 1358.393 kb on + strand, within JDDGAC_07850 at 1358.394 kb on - strand, within JDDGAC_07850 at 1358.412 kb on - strand, within JDDGAC_07850 at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.564 kb on - strand at 1358.645 kb on - strand at 1358.648 kb on + strand at 1358.745 kb on - strand at 1358.844 kb on + strand, within ureG at 1358.889 kb on - strand, within ureG at 1358.908 kb on - strand, within ureG at 1358.983 kb on + strand, within ureG at 1358.983 kb on + strand, within ureG at 1358.984 kb on - strand, within ureG at 1358.984 kb on - strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.992 kb on + strand, within ureG at 1358.992 kb on + strand, within ureG at 1358.993 kb on - strand, within ureG at 1358.993 kb on - strand, within ureG at 1358.993 kb on - strand, within ureG at 1358.998 kb on - strand, within ureG at 1359.374 kb on - strand at 1359.512 kb on + strand, within ureF at 1359.512 kb on + strand, within ureF at 1359.517 kb on - strand, within ureF at 1359.676 kb on - strand, within ureF at 1359.676 kb on - strand, within ureF at 1360.163 kb on + strand, within ureE at 1360.164 kb on - strand, within ureE at 1360.210 kb on - strand, within ureE at 1360.262 kb on + strand, within ureE at 1360.422 kb on - strand, within ureE at 1360.522 kb on + strand at 1360.534 kb on + strand at 1360.603 kb on + strand at 1360.604 kb on - strand at 1360.624 kb on - strand at 1360.626 kb on - strand at 1360.684 kb on - strand at 1361.005 kb on + strand, within ureC at 1361.017 kb on + strand, within ureC at 1361.018 kb on - strand, within ureC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 1,358,391 + JDDGAC_07850 0.72 +1.8 1,358,391 + JDDGAC_07850 0.72 -1.5 1,358,392 - JDDGAC_07850 0.72 +0.2 1,358,393 + JDDGAC_07850 0.72 -0.5 1,358,394 - JDDGAC_07850 0.73 -0.5 1,358,412 - JDDGAC_07850 0.78 +0.7 1,358,563 + -0.2 1,358,563 + +0.6 1,358,563 + -0.1 1,358,563 + -0.8 1,358,563 + -1.4 1,358,564 - -0.6 1,358,645 - -0.3 1,358,648 + -1.1 1,358,745 - +0.3 1,358,844 + ureG JDDGAC_07855 0.16 -0.9 1,358,889 - ureG JDDGAC_07855 0.24 +1.2 1,358,908 - ureG JDDGAC_07855 0.27 -0.2 1,358,983 + ureG JDDGAC_07855 0.39 +0.2 1,358,983 + ureG JDDGAC_07855 0.39 -1.1 1,358,984 - ureG JDDGAC_07855 0.39 +0.0 1,358,984 - ureG JDDGAC_07855 0.39 +1.3 1,358,990 + ureG JDDGAC_07855 0.40 -0.1 1,358,990 + ureG JDDGAC_07855 0.40 -0.9 1,358,990 + ureG JDDGAC_07855 0.40 +0.7 1,358,990 + ureG JDDGAC_07855 0.40 -0.3 1,358,990 + ureG JDDGAC_07855 0.40 -2.5 1,358,991 - ureG JDDGAC_07855 0.40 -0.5 1,358,991 - ureG JDDGAC_07855 0.40 +0.3 1,358,991 - ureG JDDGAC_07855 0.40 +0.1 1,358,991 - ureG JDDGAC_07855 0.40 -1.3 1,358,991 - ureG JDDGAC_07855 0.40 +1.0 1,358,991 - ureG JDDGAC_07855 0.40 -0.2 1,358,991 - ureG JDDGAC_07855 0.40 -0.2 1,358,992 + ureG JDDGAC_07855 0.40 -0.1 1,358,992 + ureG JDDGAC_07855 0.40 +1.0 1,358,993 - ureG JDDGAC_07855 0.40 +1.6 1,358,993 - ureG JDDGAC_07855 0.40 -0.0 1,358,993 - ureG JDDGAC_07855 0.40 +0.3 1,358,998 - ureG JDDGAC_07855 0.41 +0.5 1,359,374 - -1.0 1,359,512 + ureF JDDGAC_07860 0.21 -1.0 1,359,512 + ureF JDDGAC_07860 0.21 -0.6 1,359,517 - ureF JDDGAC_07860 0.21 -1.2 1,359,676 - ureF JDDGAC_07860 0.45 -0.9 1,359,676 - ureF JDDGAC_07860 0.45 -0.3 1,360,163 + ureE JDDGAC_07865 0.25 +1.8 1,360,164 - ureE JDDGAC_07865 0.25 -0.7 1,360,210 - ureE JDDGAC_07865 0.35 +1.7 1,360,262 + ureE JDDGAC_07865 0.46 -0.5 1,360,422 - ureE JDDGAC_07865 0.81 -0.3 1,360,522 + +0.8 1,360,534 + +1.2 1,360,603 + +0.2 1,360,604 - -1.0 1,360,624 - +0.5 1,360,626 - -0.2 1,360,684 - +1.4 1,361,005 + ureC JDDGAC_07870 0.28 -0.7 1,361,017 + ureC JDDGAC_07870 0.29 +0.0 1,361,018 - ureC JDDGAC_07870 0.29 +0.6
Or see this region's nucleotide sequence