Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07690

Experiment: WM_TP12

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_07675 and JDDGAC_07680 are separated by 88 nucleotidesJDDGAC_07680 and JDDGAC_07685 are separated by 51 nucleotidesJDDGAC_07685 and JDDGAC_07690 are separated by 342 nucleotides JDDGAC_07675: JDDGAC_07675 - Oligogalacturonate-specific porin protein KdgM, at 1,329,460 to 1,329,732 _07675 JDDGAC_07680: JDDGAC_07680 - hypothetical protein, at 1,329,821 to 1,330,000 _07680 JDDGAC_07685: JDDGAC_07685 - hypothetical protein, at 1,330,052 to 1,330,246 _07685 JDDGAC_07690: JDDGAC_07690 - IS150 conserved protein InsB, at 1,330,589 to 1,330,717 _07690 Position (kb) 1330 1331Strain fitness (log2 ratio) -2 -1 0 1 2at 1329.597 kb on + strand, within JDDGAC_07675at 1329.695 kb on - strand, within JDDGAC_07675at 1329.726 kb on - strandat 1329.752 kb on + strandat 1329.807 kb on + strandat 1329.813 kb on + strandat 1329.817 kb on - strandat 1329.872 kb on - strand, within JDDGAC_07680at 1330.014 kb on + strandat 1330.244 kb on + strandat 1330.244 kb on + strandat 1330.377 kb on + strandat 1330.378 kb on - strandat 1330.378 kb on - strandat 1330.390 kb on + strandat 1330.390 kb on + strandat 1330.407 kb on - strandat 1330.414 kb on + strandat 1330.414 kb on + strandat 1330.427 kb on - strandat 1330.464 kb on + strandat 1330.470 kb on + strandat 1330.672 kb on + strand, within JDDGAC_07690at 1330.673 kb on - strand, within JDDGAC_07690at 1330.726 kb on + strandat 1330.774 kb on + strandat 1330.811 kb on - strandat 1330.835 kb on + strandat 1330.953 kb on - strandat 1331.270 kb on - strandat 1331.670 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
remove
1,329,597 + JDDGAC_07675 0.50 +0.1
1,329,695 - JDDGAC_07675 0.86 +0.2
1,329,726 - +0.1
1,329,752 + -1.5
1,329,807 + +1.5
1,329,813 + +1.8
1,329,817 - +1.1
1,329,872 - JDDGAC_07680 0.28 -0.5
1,330,014 + -1.2
1,330,244 + -1.2
1,330,244 + +0.5
1,330,377 + +0.7
1,330,378 - +0.5
1,330,378 - -0.4
1,330,390 + -0.1
1,330,390 + -2.6
1,330,407 - -0.4
1,330,414 + +0.4
1,330,414 + -0.1
1,330,427 - +1.0
1,330,464 + -0.0
1,330,470 + +0.9
1,330,672 + JDDGAC_07690 0.64 -0.7
1,330,673 - JDDGAC_07690 0.65 -1.2
1,330,726 + -0.5
1,330,774 + -1.4
1,330,811 - +1.1
1,330,835 + +1.0
1,330,953 - -0.2
1,331,270 - +1.2
1,331,670 - -0.8

Or see this region's nucleotide sequence