Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_07675 and JDDGAC_07680 are separated by 88 nucleotides JDDGAC_07680 and JDDGAC_07685 are separated by 51 nucleotides JDDGAC_07685 and JDDGAC_07690 are separated by 342 nucleotides
JDDGAC_07675: JDDGAC_07675 - Oligogalacturonate-specific porin protein KdgM, at 1,329,460 to 1,329,732
_07675
JDDGAC_07680: JDDGAC_07680 - hypothetical protein, at 1,329,821 to 1,330,000
_07680
JDDGAC_07685: JDDGAC_07685 - hypothetical protein, at 1,330,052 to 1,330,246
_07685
JDDGAC_07690: JDDGAC_07690 - IS150 conserved protein InsB, at 1,330,589 to 1,330,717
_07690
Position (kb)
1330
1331 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1329.597 kb on + strand, within JDDGAC_07675 at 1329.695 kb on - strand, within JDDGAC_07675 at 1329.726 kb on - strand at 1329.752 kb on + strand at 1329.807 kb on + strand at 1329.813 kb on + strand at 1329.817 kb on - strand at 1329.872 kb on - strand, within JDDGAC_07680 at 1330.014 kb on + strand at 1330.244 kb on + strand at 1330.244 kb on + strand at 1330.377 kb on + strand at 1330.378 kb on - strand at 1330.378 kb on - strand at 1330.390 kb on + strand at 1330.390 kb on + strand at 1330.407 kb on - strand at 1330.414 kb on + strand at 1330.414 kb on + strand at 1330.427 kb on - strand at 1330.464 kb on + strand at 1330.470 kb on + strand at 1330.672 kb on + strand, within JDDGAC_07690 at 1330.673 kb on - strand, within JDDGAC_07690 at 1330.726 kb on + strand at 1330.774 kb on + strand at 1330.811 kb on - strand at 1330.835 kb on + strand at 1330.953 kb on - strand at 1331.270 kb on - strand at 1331.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 1,329,597 + JDDGAC_07675 0.50 +0.1 1,329,695 - JDDGAC_07675 0.86 +0.2 1,329,726 - +0.1 1,329,752 + -1.5 1,329,807 + +1.5 1,329,813 + +1.8 1,329,817 - +1.1 1,329,872 - JDDGAC_07680 0.28 -0.5 1,330,014 + -1.2 1,330,244 + -1.2 1,330,244 + +0.5 1,330,377 + +0.7 1,330,378 - +0.5 1,330,378 - -0.4 1,330,390 + -0.1 1,330,390 + -2.6 1,330,407 - -0.4 1,330,414 + +0.4 1,330,414 + -0.1 1,330,427 - +1.0 1,330,464 + -0.0 1,330,470 + +0.9 1,330,672 + JDDGAC_07690 0.64 -0.7 1,330,673 - JDDGAC_07690 0.65 -1.2 1,330,726 + -0.5 1,330,774 + -1.4 1,330,811 - +1.1 1,330,835 + +1.0 1,330,953 - -0.2 1,331,270 - +1.2 1,331,670 - -0.8
Or see this region's nucleotide sequence