Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06355 and yciE are separated by 78 nucleotides yciE and yciE are separated by 36 nucleotides yciE and cotJC are separated by 18 nucleotides
JDDGAC_06355: JDDGAC_06355 - stress-induced acidophilic repeat motif-containing protein, at 1,111,371 to 1,111,553
_06355
JDDGAC_06360: yciE - Protein YciF, at 1,111,632 to 1,112,132
yciE
JDDGAC_06365: yciE - Protein YciE, at 1,112,169 to 1,112,675
yciE
JDDGAC_06370: cotJC - Mn-containing catalase, at 1,112,694 to 1,113,584
cotJC
Position (kb)
1112
1113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1111.173 kb on + strand at 1111.259 kb on + strand at 1111.259 kb on + strand at 1112.066 kb on + strand, within yciE at 1112.138 kb on - strand at 1112.345 kb on - strand, within yciE at 1112.538 kb on - strand, within yciE at 1112.538 kb on - strand, within yciE at 1112.723 kb on + strand at 1112.735 kb on - strand at 1112.818 kb on - strand, within cotJC at 1112.833 kb on + strand, within cotJC at 1112.875 kb on + strand, within cotJC at 1112.875 kb on + strand, within cotJC at 1112.890 kb on + strand, within cotJC at 1112.890 kb on + strand, within cotJC at 1113.022 kb on + strand, within cotJC at 1113.022 kb on + strand, within cotJC at 1113.022 kb on + strand, within cotJC at 1113.090 kb on + strand, within cotJC at 1113.091 kb on - strand, within cotJC at 1113.091 kb on - strand, within cotJC at 1113.099 kb on - strand, within cotJC at 1113.333 kb on + strand, within cotJC at 1113.333 kb on + strand, within cotJC at 1113.336 kb on + strand, within cotJC at 1113.336 kb on + strand, within cotJC at 1113.368 kb on + strand, within cotJC at 1113.478 kb on + strand, within cotJC at 1113.600 kb on + strand at 1113.600 kb on + strand at 1113.613 kb on + strand at 1113.614 kb on - strand at 1113.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 1,111,173 + -0.0 1,111,259 + +1.1 1,111,259 + +0.1 1,112,066 + yciE JDDGAC_06360 0.87 +0.4 1,112,138 - +1.5 1,112,345 - yciE JDDGAC_06365 0.35 +0.2 1,112,538 - yciE JDDGAC_06365 0.73 +1.8 1,112,538 - yciE JDDGAC_06365 0.73 -0.2 1,112,723 + -2.4 1,112,735 - +1.4 1,112,818 - cotJC JDDGAC_06370 0.14 +0.5 1,112,833 + cotJC JDDGAC_06370 0.16 +1.0 1,112,875 + cotJC JDDGAC_06370 0.20 +0.5 1,112,875 + cotJC JDDGAC_06370 0.20 -0.1 1,112,890 + cotJC JDDGAC_06370 0.22 +0.4 1,112,890 + cotJC JDDGAC_06370 0.22 +0.9 1,113,022 + cotJC JDDGAC_06370 0.37 +1.4 1,113,022 + cotJC JDDGAC_06370 0.37 +0.1 1,113,022 + cotJC JDDGAC_06370 0.37 +0.5 1,113,090 + cotJC JDDGAC_06370 0.44 -0.9 1,113,091 - cotJC JDDGAC_06370 0.45 +0.7 1,113,091 - cotJC JDDGAC_06370 0.45 -1.9 1,113,099 - cotJC JDDGAC_06370 0.45 -0.3 1,113,333 + cotJC JDDGAC_06370 0.72 -2.0 1,113,333 + cotJC JDDGAC_06370 0.72 -0.2 1,113,336 + cotJC JDDGAC_06370 0.72 -0.2 1,113,336 + cotJC JDDGAC_06370 0.72 +0.5 1,113,368 + cotJC JDDGAC_06370 0.76 +0.1 1,113,478 + cotJC JDDGAC_06370 0.88 +0.7 1,113,600 + -0.2 1,113,600 + -0.7 1,113,613 + +0.4 1,113,614 - +1.2 1,113,667 - +0.5
Or see this region's nucleotide sequence