Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06365

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06355 and yciE are separated by 78 nucleotidesyciE and yciE are separated by 36 nucleotidesyciE and cotJC are separated by 18 nucleotides JDDGAC_06355: JDDGAC_06355 - stress-induced acidophilic repeat motif-containing protein, at 1,111,371 to 1,111,553 _06355 JDDGAC_06360: yciE - Protein YciF, at 1,111,632 to 1,112,132 yciE JDDGAC_06365: yciE - Protein YciE, at 1,112,169 to 1,112,675 yciE JDDGAC_06370: cotJC - Mn-containing catalase, at 1,112,694 to 1,113,584 cotJC Position (kb) 1112 1113Strain fitness (log2 ratio) -2 -1 0 1 2at 1111.173 kb on + strandat 1111.259 kb on + strandat 1111.259 kb on + strandat 1112.066 kb on + strand, within yciEat 1112.138 kb on - strandat 1112.345 kb on - strand, within yciEat 1112.538 kb on - strand, within yciEat 1112.538 kb on - strand, within yciEat 1112.723 kb on + strandat 1112.735 kb on - strandat 1112.818 kb on - strand, within cotJCat 1112.833 kb on + strand, within cotJCat 1112.875 kb on + strand, within cotJCat 1112.875 kb on + strand, within cotJCat 1112.890 kb on + strand, within cotJCat 1112.890 kb on + strand, within cotJCat 1113.022 kb on + strand, within cotJCat 1113.022 kb on + strand, within cotJCat 1113.022 kb on + strand, within cotJCat 1113.090 kb on + strand, within cotJCat 1113.091 kb on - strand, within cotJCat 1113.091 kb on - strand, within cotJCat 1113.099 kb on - strand, within cotJCat 1113.333 kb on + strand, within cotJCat 1113.333 kb on + strand, within cotJCat 1113.336 kb on + strand, within cotJCat 1113.336 kb on + strand, within cotJCat 1113.368 kb on + strand, within cotJCat 1113.478 kb on + strand, within cotJCat 1113.600 kb on + strandat 1113.600 kb on + strandat 1113.613 kb on + strandat 1113.614 kb on - strandat 1113.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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1,111,173 + -0.0
1,111,259 + +1.1
1,111,259 + +0.1
1,112,066 + yciE JDDGAC_06360 0.87 +0.4
1,112,138 - +1.5
1,112,345 - yciE JDDGAC_06365 0.35 +0.2
1,112,538 - yciE JDDGAC_06365 0.73 +1.8
1,112,538 - yciE JDDGAC_06365 0.73 -0.2
1,112,723 + -2.4
1,112,735 - +1.4
1,112,818 - cotJC JDDGAC_06370 0.14 +0.5
1,112,833 + cotJC JDDGAC_06370 0.16 +1.0
1,112,875 + cotJC JDDGAC_06370 0.20 +0.5
1,112,875 + cotJC JDDGAC_06370 0.20 -0.1
1,112,890 + cotJC JDDGAC_06370 0.22 +0.4
1,112,890 + cotJC JDDGAC_06370 0.22 +0.9
1,113,022 + cotJC JDDGAC_06370 0.37 +1.4
1,113,022 + cotJC JDDGAC_06370 0.37 +0.1
1,113,022 + cotJC JDDGAC_06370 0.37 +0.5
1,113,090 + cotJC JDDGAC_06370 0.44 -0.9
1,113,091 - cotJC JDDGAC_06370 0.45 +0.7
1,113,091 - cotJC JDDGAC_06370 0.45 -1.9
1,113,099 - cotJC JDDGAC_06370 0.45 -0.3
1,113,333 + cotJC JDDGAC_06370 0.72 -2.0
1,113,333 + cotJC JDDGAC_06370 0.72 -0.2
1,113,336 + cotJC JDDGAC_06370 0.72 -0.2
1,113,336 + cotJC JDDGAC_06370 0.72 +0.5
1,113,368 + cotJC JDDGAC_06370 0.76 +0.1
1,113,478 + cotJC JDDGAC_06370 0.88 +0.7
1,113,600 + -0.2
1,113,600 + -0.7
1,113,613 + +0.4
1,113,614 - +1.2
1,113,667 - +0.5

Or see this region's nucleotide sequence