Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eamA and marB are separated by 30 nucleotides marB and marA are separated by 31 nucleotides marA and marR are separated by 19 nucleotides marR and marC are separated by 211 nucleotides
JDDGAC_03575: eamA - O-acetylserine/cysteine exporter, at 594,976 to 595,875
eamA
JDDGAC_03580: marB - multiple antibiotic resistance protein MarB, at 595,906 to 596,124
marB
JDDGAC_03585: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 596,156 to 596,539
marA
JDDGAC_03590: marR - multiple antibiotic resistance transcriptional regulator MarR, at 596,559 to 596,993
marR
JDDGAC_03595: marC - NAAT family transporter MarC, at 597,205 to 597,870
marC
Position (kb) 596
597 Strain fitness (log2 ratio) -1
0
1 at 595.374 kb on + strand, within eamA at 595.630 kb on + strand, within eamA at 595.652 kb on + strand, within eamA at 595.757 kb on + strand, within eamA at 595.902 kb on + strand at 595.907 kb on + strand at 595.908 kb on - strand at 595.908 kb on - strand at 595.908 kb on - strand at 595.908 kb on - strand at 595.924 kb on - strand at 595.926 kb on - strand at 596.207 kb on - strand, within marA at 596.305 kb on - strand, within marA at 596.516 kb on - strand at 596.653 kb on - strand, within marR at 596.653 kb on - strand, within marR at 596.775 kb on - strand, within marR at 596.775 kb on - strand, within marR at 596.775 kb on - strand, within marR at 596.880 kb on - strand, within marR at 596.931 kb on - strand, within marR at 596.997 kb on - strand at 596.997 kb on - strand at 597.162 kb on + strand at 597.163 kb on - strand at 597.210 kb on - strand at 597.248 kb on + strand at 597.405 kb on + strand, within marC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 595,374 + eamA JDDGAC_03575 0.44 -0.1 595,630 + eamA JDDGAC_03575 0.73 -0.6 595,652 + eamA JDDGAC_03575 0.75 -0.6 595,757 + eamA JDDGAC_03575 0.87 -0.3 595,902 + -0.0 595,907 + +0.0 595,908 - +0.3 595,908 - +1.1 595,908 - +0.7 595,908 - +1.2 595,924 - -0.9 595,926 - -0.8 596,207 - marA JDDGAC_03585 0.13 +0.4 596,305 - marA JDDGAC_03585 0.39 +0.5 596,516 - +0.2 596,653 - marR JDDGAC_03590 0.22 -0.1 596,653 - marR JDDGAC_03590 0.22 -1.0 596,775 - marR JDDGAC_03590 0.50 +0.8 596,775 - marR JDDGAC_03590 0.50 -0.3 596,775 - marR JDDGAC_03590 0.50 +1.0 596,880 - marR JDDGAC_03590 0.74 -0.1 596,931 - marR JDDGAC_03590 0.86 +0.9 596,997 - +0.6 596,997 - -0.2 597,162 + -0.8 597,163 - +0.2 597,210 - +0.5 597,248 + +0.1 597,405 + marC JDDGAC_03595 0.30 +0.4
Or see this region's nucleotide sequence