Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsxA and ydgK are separated by 76 nucleotides ydgK and ydgT are separated by 85 nucleotides ydgT and blr are separated by 272 nucleotides blr and ydgJ are separated by 242 nucleotides
JDDGAC_02145: rsxA - electron transport complex subunit RsxA, at 384,574 to 385,155
rsxA
JDDGAC_02150: ydgK - Inner membrane protein YdgK, at 385,232 to 385,672
ydgK
JDDGAC_02155: ydgT - transcription modulator YdgT, at 385,758 to 385,973
ydgT
JDDGAC_02160: blr - division septum protein Blr, at 386,246 to 386,371
blr
JDDGAC_02165: ydgJ - Uncharacterized oxidoreductase YdgJ, at 386,614 to 387,654
ydgJ
Position (kb) 385
386 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 384.858 kb on - strand, within rsxA at 384.955 kb on - strand, within rsxA at 385.121 kb on - strand at 385.183 kb on + strand at 385.400 kb on - strand, within ydgK at 385.405 kb on - strand, within ydgK at 385.462 kb on - strand, within ydgK at 385.462 kb on - strand, within ydgK at 385.464 kb on + strand, within ydgK at 385.573 kb on - strand, within ydgK at 385.595 kb on - strand, within ydgK at 385.598 kb on + strand, within ydgK at 385.672 kb on + strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.715 kb on - strand at 385.729 kb on - strand at 385.729 kb on - strand at 385.769 kb on - strand at 385.856 kb on - strand, within ydgT at 385.859 kb on + strand, within ydgT at 385.860 kb on - strand, within ydgT at 385.860 kb on - strand, within ydgT at 385.974 kb on - strand at 385.985 kb on - strand at 386.057 kb on - strand at 386.110 kb on - strand at 386.134 kb on - strand at 386.248 kb on - strand at 386.248 kb on - strand at 386.403 kb on - strand at 386.416 kb on - strand at 386.435 kb on + strand at 386.512 kb on + strand at 386.518 kb on - strand at 386.592 kb on + strand at 386.592 kb on + strand at 386.654 kb on - strand at 386.826 kb on + strand, within ydgJ at 386.838 kb on + strand, within ydgJ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 384,858 - rsxA JDDGAC_02145 0.49 +1.2 384,955 - rsxA JDDGAC_02145 0.65 -0.7 385,121 - -2.5 385,183 + +0.6 385,400 - ydgK JDDGAC_02150 0.38 +0.8 385,405 - ydgK JDDGAC_02150 0.39 -0.1 385,462 - ydgK JDDGAC_02150 0.52 -0.3 385,462 - ydgK JDDGAC_02150 0.52 +0.2 385,464 + ydgK JDDGAC_02150 0.53 -1.5 385,573 - ydgK JDDGAC_02150 0.77 -0.3 385,595 - ydgK JDDGAC_02150 0.82 -0.6 385,598 + ydgK JDDGAC_02150 0.83 -0.8 385,672 + +1.2 385,673 - -2.3 385,673 - +0.2 385,673 - +0.4 385,673 - +0.1 385,673 - -1.5 385,715 - -0.5 385,729 - +1.4 385,729 - -0.1 385,769 - +0.1 385,856 - ydgT JDDGAC_02155 0.45 -2.0 385,859 + ydgT JDDGAC_02155 0.47 -0.9 385,860 - ydgT JDDGAC_02155 0.47 -0.1 385,860 - ydgT JDDGAC_02155 0.47 -0.4 385,974 - +0.7 385,985 - -0.3 386,057 - -0.6 386,110 - -1.3 386,134 - -0.9 386,248 - -0.7 386,248 - -1.1 386,403 - -0.4 386,416 - -0.1 386,435 + +1.3 386,512 + +0.9 386,518 - +0.4 386,592 + +0.0 386,592 + +0.6 386,654 - +3.5 386,826 + ydgJ JDDGAC_02165 0.20 -0.4 386,838 + ydgJ JDDGAC_02165 0.22 -0.9
Or see this region's nucleotide sequence