Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_00585 and JDDGAC_00590 are separated by 15 nucleotides JDDGAC_00590 and JDDGAC_00595 are separated by 29 nucleotides JDDGAC_00595 and xerD are separated by 5 nucleotides
JDDGAC_00585: JDDGAC_00585 - transcriptional regulator, at 93,657 to 94,061
_00585
JDDGAC_00590: JDDGAC_00590 - Putative transmembrane protein, at 94,077 to 94,727
_00590
JDDGAC_00595: JDDGAC_00595 - DUF2511 domain-containing protein, at 94,757 to 95,104
_00595
JDDGAC_00600: xerD - integrase, at 95,110 to 96,111
xerD
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 94.040 kb on + strand at 94.055 kb on + strand at 94.155 kb on + strand, within JDDGAC_00590 at 94.343 kb on + strand, within JDDGAC_00590 at 94.432 kb on + strand, within JDDGAC_00590 at 94.444 kb on + strand, within JDDGAC_00590 at 94.444 kb on + strand, within JDDGAC_00590 at 94.448 kb on + strand, within JDDGAC_00590 at 94.873 kb on + strand, within JDDGAC_00595 at 94.893 kb on + strand, within JDDGAC_00595 at 94.946 kb on + strand, within JDDGAC_00595 at 95.091 kb on + strand at 95.102 kb on + strand at 95.424 kb on + strand, within xerD at 95.425 kb on - strand, within xerD at 95.513 kb on - strand, within xerD at 95.516 kb on + strand, within xerD at 95.517 kb on - strand, within xerD at 95.627 kb on + strand, within xerD at 95.628 kb on - strand, within xerD at 95.835 kb on + strand, within xerD at 95.836 kb on - strand, within xerD at 95.875 kb on + strand, within xerD at 95.876 kb on - strand, within xerD at 95.970 kb on + strand, within xerD at 95.989 kb on - strand, within xerD at 95.989 kb on - strand, within xerD at 96.027 kb on - strand at 96.037 kb on - strand at 96.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 94,040 + -1.0 94,055 + +0.4 94,155 + JDDGAC_00590 0.12 -0.7 94,343 + JDDGAC_00590 0.41 -0.1 94,432 + JDDGAC_00590 0.55 +1.4 94,444 + JDDGAC_00590 0.56 +0.7 94,444 + JDDGAC_00590 0.56 -0.2 94,448 + JDDGAC_00590 0.57 -0.1 94,873 + JDDGAC_00595 0.33 -3.3 94,893 + JDDGAC_00595 0.39 -1.1 94,946 + JDDGAC_00595 0.54 -0.1 95,091 + +1.7 95,102 + -0.8 95,424 + xerD JDDGAC_00600 0.31 +0.9 95,425 - xerD JDDGAC_00600 0.31 +1.6 95,513 - xerD JDDGAC_00600 0.40 -1.2 95,516 + xerD JDDGAC_00600 0.41 +1.0 95,517 - xerD JDDGAC_00600 0.41 -0.1 95,627 + xerD JDDGAC_00600 0.52 +0.8 95,628 - xerD JDDGAC_00600 0.52 -1.8 95,835 + xerD JDDGAC_00600 0.72 +0.1 95,836 - xerD JDDGAC_00600 0.72 -0.8 95,875 + xerD JDDGAC_00600 0.76 -1.4 95,876 - xerD JDDGAC_00600 0.76 -0.1 95,970 + xerD JDDGAC_00600 0.86 +0.4 95,989 - xerD JDDGAC_00600 0.88 -0.6 95,989 - xerD JDDGAC_00600 0.88 -0.0 96,027 - +0.0 96,037 - +0.3 96,068 + +0.4
Or see this region's nucleotide sequence