Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_00450 and JDDGAC_00455 overlap by 1 nucleotides JDDGAC_00455 and JDDGAC_00460 are separated by 54 nucleotides JDDGAC_00460 and JDDGAC_00465 are separated by 150 nucleotides
JDDGAC_00450: JDDGAC_00450 - phage tail protein, at 77,694 to 78,878
_00450
JDDGAC_00455: JDDGAC_00455 - phage major tail tube protein, at 78,878 to 79,390
_00455
JDDGAC_00460: JDDGAC_00460 - phage tail protein, at 79,445 to 79,810
_00460
JDDGAC_00465: JDDGAC_00465 - Putative tail fiber component of prophage CP-933T, at 79,961 to 82,051
_00465
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 78.485 kb on + strand, within JDDGAC_00450 at 78.541 kb on - strand, within JDDGAC_00450 at 78.541 kb on - strand, within JDDGAC_00450 at 78.541 kb on - strand, within JDDGAC_00450 at 78.555 kb on + strand, within JDDGAC_00450 at 78.556 kb on - strand, within JDDGAC_00450 at 78.556 kb on - strand, within JDDGAC_00450 at 78.651 kb on - strand, within JDDGAC_00450 at 78.720 kb on + strand, within JDDGAC_00450 at 78.734 kb on + strand, within JDDGAC_00450 at 78.752 kb on - strand, within JDDGAC_00450 at 78.783 kb on + strand at 78.783 kb on + strand at 78.785 kb on + strand at 79.022 kb on - strand, within JDDGAC_00455 at 79.100 kb on + strand, within JDDGAC_00455 at 79.145 kb on + strand, within JDDGAC_00455 at 79.250 kb on + strand, within JDDGAC_00455 at 79.271 kb on + strand, within JDDGAC_00455 at 79.271 kb on + strand, within JDDGAC_00455 at 79.329 kb on - strand, within JDDGAC_00455 at 79.391 kb on + strand at 79.396 kb on - strand at 79.487 kb on - strand, within JDDGAC_00460 at 79.529 kb on - strand, within JDDGAC_00460 at 79.658 kb on - strand, within JDDGAC_00460 at 79.658 kb on - strand, within JDDGAC_00460 at 79.738 kb on - strand, within JDDGAC_00460 at 79.835 kb on + strand at 79.835 kb on + strand at 79.854 kb on + strand at 80.194 kb on - strand, within JDDGAC_00465 at 80.247 kb on + strand, within JDDGAC_00465 at 80.393 kb on + strand, within JDDGAC_00465 at 80.394 kb on - strand, within JDDGAC_00465 at 80.767 kb on + strand, within JDDGAC_00465 at 80.768 kb on - strand, within JDDGAC_00465
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 78,485 + JDDGAC_00450 0.67 -1.3 78,541 - JDDGAC_00450 0.71 -1.0 78,541 - JDDGAC_00450 0.71 -0.2 78,541 - JDDGAC_00450 0.71 -0.1 78,555 + JDDGAC_00450 0.73 +0.5 78,556 - JDDGAC_00450 0.73 -1.7 78,556 - JDDGAC_00450 0.73 -0.6 78,651 - JDDGAC_00450 0.81 -0.0 78,720 + JDDGAC_00450 0.87 -2.4 78,734 + JDDGAC_00450 0.88 +0.8 78,752 - JDDGAC_00450 0.89 +0.7 78,783 + +0.7 78,783 + -0.2 78,785 + +0.7 79,022 - JDDGAC_00455 0.28 -0.7 79,100 + JDDGAC_00455 0.43 -1.0 79,145 + JDDGAC_00455 0.52 +0.3 79,250 + JDDGAC_00455 0.73 +1.1 79,271 + JDDGAC_00455 0.77 +0.5 79,271 + JDDGAC_00455 0.77 -0.7 79,329 - JDDGAC_00455 0.88 +0.6 79,391 + -0.9 79,396 - +0.9 79,487 - JDDGAC_00460 0.11 -1.6 79,529 - JDDGAC_00460 0.23 -0.1 79,658 - JDDGAC_00460 0.58 -1.9 79,658 - JDDGAC_00460 0.58 -0.2 79,738 - JDDGAC_00460 0.80 -1.7 79,835 + +0.8 79,835 + +0.5 79,854 + +0.4 80,194 - JDDGAC_00465 0.11 +0.5 80,247 + JDDGAC_00465 0.14 +0.5 80,393 + JDDGAC_00465 0.21 -2.1 80,394 - JDDGAC_00465 0.21 -1.4 80,767 + JDDGAC_00465 0.39 -1.1 80,768 - JDDGAC_00465 0.39 +0.6
Or see this region's nucleotide sequence