Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Asn_trna and mtfA are separated by 100 nucleotides mtfA and Ser_trna are separated by 93 nucleotides Ser_trna and xerD are separated by 52 nucleotides
JDDGAC_29335: Asn_trna - tRNA-Asn(gtt), at 5,603,455 to 5,603,530
_trna
JDDGAC_29340: mtfA - DgsA anti-repressor MtfA, at 5,603,631 to 5,604,428
mtfA
JDDGAC_29345: Ser_trna - tRNA-Ser(cga), at 5,604,522 to 5,604,611
_trna
JDDGAC_29350: xerD - integrase, at 5,604,664 to 5,605,686
xerD
Position (kb) 5604
5605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5603.633 kb on - strand at 5603.663 kb on + strand at 5603.664 kb on - strand at 5603.991 kb on - strand, within mtfA at 5604.027 kb on + strand, within mtfA at 5604.027 kb on + strand, within mtfA at 5604.028 kb on - strand, within mtfA at 5604.028 kb on - strand, within mtfA at 5604.028 kb on - strand, within mtfA at 5604.086 kb on + strand, within mtfA at 5604.087 kb on - strand, within mtfA at 5604.193 kb on - strand, within mtfA at 5604.312 kb on + strand, within mtfA at 5604.344 kb on + strand, within mtfA at 5604.346 kb on - strand, within mtfA at 5604.422 kb on + strand at 5604.422 kb on + strand at 5604.422 kb on + strand at 5604.482 kb on - strand at 5604.635 kb on + strand at 5604.740 kb on + strand at 5604.892 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.923 kb on + strand, within xerD at 5604.949 kb on + strand, within xerD at 5604.949 kb on + strand, within xerD at 5604.950 kb on - strand, within xerD at 5604.950 kb on - strand, within xerD at 5604.953 kb on + strand, within xerD at 5604.954 kb on - strand, within xerD at 5604.968 kb on - strand, within xerD at 5605.091 kb on - strand, within xerD at 5605.121 kb on + strand, within xerD at 5605.122 kb on - strand, within xerD at 5605.165 kb on + strand, within xerD at 5605.168 kb on + strand, within xerD at 5605.193 kb on - strand, within xerD at 5605.269 kb on - strand, within xerD at 5605.278 kb on + strand, within xerD at 5605.278 kb on + strand, within xerD at 5605.278 kb on + strand, within xerD at 5605.279 kb on - strand, within xerD at 5605.279 kb on - strand, within xerD at 5605.279 kb on - strand, within xerD at 5605.294 kb on - strand, within xerD at 5605.324 kb on - strand, within xerD at 5605.324 kb on - strand, within xerD at 5605.453 kb on - strand, within xerD at 5605.453 kb on - strand, within xerD at 5605.463 kb on + strand, within xerD at 5605.463 kb on + strand, within xerD at 5605.467 kb on - strand, within xerD at 5605.582 kb on + strand, within xerD at 5605.583 kb on - strand, within xerD at 5605.583 kb on - strand, within xerD
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,603,633 - -0.2 5,603,663 + -0.3 5,603,664 - -0.4 5,603,991 - mtfA JDDGAC_29340 0.45 -0.4 5,604,027 + mtfA JDDGAC_29340 0.50 -2.8 5,604,027 + mtfA JDDGAC_29340 0.50 +1.3 5,604,028 - mtfA JDDGAC_29340 0.50 -0.9 5,604,028 - mtfA JDDGAC_29340 0.50 +0.5 5,604,028 - mtfA JDDGAC_29340 0.50 +1.2 5,604,086 + mtfA JDDGAC_29340 0.57 -0.7 5,604,087 - mtfA JDDGAC_29340 0.57 +0.7 5,604,193 - mtfA JDDGAC_29340 0.70 +0.0 5,604,312 + mtfA JDDGAC_29340 0.85 -1.1 5,604,344 + mtfA JDDGAC_29340 0.89 -1.0 5,604,346 - mtfA JDDGAC_29340 0.90 +0.1 5,604,422 + -0.6 5,604,422 + -1.6 5,604,422 + -0.8 5,604,482 - -0.7 5,604,635 + -1.1 5,604,740 + +1.2 5,604,892 + xerD JDDGAC_29350 0.22 +0.8 5,604,921 + xerD JDDGAC_29350 0.25 +0.9 5,604,921 + xerD JDDGAC_29350 0.25 -0.1 5,604,921 + xerD JDDGAC_29350 0.25 +2.2 5,604,921 + xerD JDDGAC_29350 0.25 +0.3 5,604,922 - xerD JDDGAC_29350 0.25 -0.2 5,604,922 - xerD JDDGAC_29350 0.25 -1.0 5,604,922 - xerD JDDGAC_29350 0.25 -0.3 5,604,922 - xerD JDDGAC_29350 0.25 -0.2 5,604,923 + xerD JDDGAC_29350 0.25 -1.3 5,604,949 + xerD JDDGAC_29350 0.28 +0.5 5,604,949 + xerD JDDGAC_29350 0.28 -0.6 5,604,950 - xerD JDDGAC_29350 0.28 +0.9 5,604,950 - xerD JDDGAC_29350 0.28 -0.8 5,604,953 + xerD JDDGAC_29350 0.28 -0.5 5,604,954 - xerD JDDGAC_29350 0.28 +0.4 5,604,968 - xerD JDDGAC_29350 0.30 +0.3 5,605,091 - xerD JDDGAC_29350 0.42 +0.0 5,605,121 + xerD JDDGAC_29350 0.45 -1.0 5,605,122 - xerD JDDGAC_29350 0.45 +1.0 5,605,165 + xerD JDDGAC_29350 0.49 +1.0 5,605,168 + xerD JDDGAC_29350 0.49 -0.6 5,605,193 - xerD JDDGAC_29350 0.52 +0.4 5,605,269 - xerD JDDGAC_29350 0.59 +0.6 5,605,278 + xerD JDDGAC_29350 0.60 +0.9 5,605,278 + xerD JDDGAC_29350 0.60 -1.2 5,605,278 + xerD JDDGAC_29350 0.60 -0.6 5,605,279 - xerD JDDGAC_29350 0.60 +0.6 5,605,279 - xerD JDDGAC_29350 0.60 +0.7 5,605,279 - xerD JDDGAC_29350 0.60 +0.7 5,605,294 - xerD JDDGAC_29350 0.62 -0.5 5,605,324 - xerD JDDGAC_29350 0.65 -1.1 5,605,324 - xerD JDDGAC_29350 0.65 +1.1 5,605,453 - xerD JDDGAC_29350 0.77 +0.2 5,605,453 - xerD JDDGAC_29350 0.77 -0.7 5,605,463 + xerD JDDGAC_29350 0.78 +0.7 5,605,463 + xerD JDDGAC_29350 0.78 +0.5 5,605,467 - xerD JDDGAC_29350 0.78 -0.4 5,605,582 + xerD JDDGAC_29350 0.90 -1.0 5,605,583 - xerD JDDGAC_29350 0.90 -0.3 5,605,583 - xerD JDDGAC_29350 0.90 +1.0
Or see this region's nucleotide sequence