Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycdB and amn are separated by 342 nucleotides amn and shiA are separated by 101 nucleotides
JDDGAC_29305: ycdB - putative transcriptional regulatory protein YcdB, at 5,589,600 to 5,590,316
ycdB
JDDGAC_29310: amn - AMP nucleosidase, at 5,590,659 to 5,592,113
amn
JDDGAC_29315: shiA - shikimate transporter, at 5,592,215 to 5,593,531
shiA
Position (kb) 5590
5591
5592
5593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5589.900 kb on - strand, within ycdB at 5589.900 kb on - strand, within ycdB at 5589.932 kb on - strand, within ycdB at 5590.469 kb on + strand at 5590.657 kb on + strand at 5590.769 kb on + strand at 5590.845 kb on + strand, within amn at 5590.959 kb on + strand, within amn at 5591.144 kb on - strand, within amn at 5591.157 kb on + strand, within amn at 5591.162 kb on - strand, within amn at 5591.229 kb on + strand, within amn at 5591.230 kb on - strand, within amn at 5591.298 kb on - strand, within amn at 5591.431 kb on + strand, within amn at 5591.431 kb on + strand, within amn at 5591.439 kb on - strand, within amn at 5591.488 kb on + strand, within amn at 5591.489 kb on - strand, within amn at 5591.497 kb on + strand, within amn at 5591.498 kb on - strand, within amn at 5591.546 kb on + strand, within amn at 5591.548 kb on + strand, within amn at 5591.627 kb on - strand, within amn at 5591.740 kb on + strand, within amn at 5591.740 kb on + strand, within amn at 5591.792 kb on - strand, within amn at 5591.810 kb on + strand, within amn at 5591.810 kb on + strand, within amn at 5591.827 kb on + strand, within amn at 5591.882 kb on + strand, within amn at 5592.005 kb on + strand at 5592.005 kb on + strand at 5592.008 kb on + strand at 5592.010 kb on + strand at 5592.011 kb on - strand at 5592.039 kb on + strand at 5592.105 kb on - strand at 5592.107 kb on + strand at 5592.151 kb on + strand at 5592.155 kb on - strand at 5592.282 kb on + strand at 5592.315 kb on + strand at 5592.316 kb on - strand at 5592.316 kb on - strand at 5592.316 kb on - strand at 5592.398 kb on - strand, within shiA at 5592.398 kb on - strand, within shiA at 5592.406 kb on - strand, within shiA at 5592.575 kb on - strand, within shiA at 5592.647 kb on + strand, within shiA at 5592.648 kb on - strand, within shiA at 5592.705 kb on + strand, within shiA at 5592.705 kb on + strand, within shiA at 5592.732 kb on + strand, within shiA at 5592.733 kb on - strand, within shiA at 5592.733 kb on - strand, within shiA at 5592.767 kb on - strand, within shiA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 5,589,900 - ycdB JDDGAC_29305 0.42 -0.7 5,589,900 - ycdB JDDGAC_29305 0.42 +3.8 5,589,932 - ycdB JDDGAC_29305 0.46 +0.2 5,590,469 + -2.2 5,590,657 + -0.6 5,590,769 + +1.5 5,590,845 + amn JDDGAC_29310 0.13 +0.9 5,590,959 + amn JDDGAC_29310 0.21 +0.2 5,591,144 - amn JDDGAC_29310 0.33 +0.1 5,591,157 + amn JDDGAC_29310 0.34 -1.1 5,591,162 - amn JDDGAC_29310 0.35 -1.7 5,591,229 + amn JDDGAC_29310 0.39 -0.1 5,591,230 - amn JDDGAC_29310 0.39 +0.3 5,591,298 - amn JDDGAC_29310 0.44 -0.1 5,591,431 + amn JDDGAC_29310 0.53 -0.5 5,591,431 + amn JDDGAC_29310 0.53 +0.8 5,591,439 - amn JDDGAC_29310 0.54 -0.9 5,591,488 + amn JDDGAC_29310 0.57 -1.1 5,591,489 - amn JDDGAC_29310 0.57 +0.0 5,591,497 + amn JDDGAC_29310 0.58 +0.5 5,591,498 - amn JDDGAC_29310 0.58 +0.5 5,591,546 + amn JDDGAC_29310 0.61 +1.4 5,591,548 + amn JDDGAC_29310 0.61 +0.6 5,591,627 - amn JDDGAC_29310 0.67 -0.1 5,591,740 + amn JDDGAC_29310 0.74 +0.6 5,591,740 + amn JDDGAC_29310 0.74 -0.3 5,591,792 - amn JDDGAC_29310 0.78 +0.2 5,591,810 + amn JDDGAC_29310 0.79 +0.7 5,591,810 + amn JDDGAC_29310 0.79 +0.0 5,591,827 + amn JDDGAC_29310 0.80 +0.6 5,591,882 + amn JDDGAC_29310 0.84 -0.3 5,592,005 + +0.5 5,592,005 + -0.0 5,592,008 + +0.5 5,592,010 + -0.8 5,592,011 - -1.2 5,592,039 + -0.6 5,592,105 - -0.6 5,592,107 + -0.6 5,592,151 + -0.3 5,592,155 - +0.2 5,592,282 + +0.2 5,592,315 + +0.1 5,592,316 - +1.0 5,592,316 - +0.2 5,592,316 - +0.2 5,592,398 - shiA JDDGAC_29315 0.14 -0.8 5,592,398 - shiA JDDGAC_29315 0.14 +0.1 5,592,406 - shiA JDDGAC_29315 0.15 -2.9 5,592,575 - shiA JDDGAC_29315 0.27 +0.9 5,592,647 + shiA JDDGAC_29315 0.33 +1.1 5,592,648 - shiA JDDGAC_29315 0.33 +0.0 5,592,705 + shiA JDDGAC_29315 0.37 +1.2 5,592,705 + shiA JDDGAC_29315 0.37 +0.2 5,592,732 + shiA JDDGAC_29315 0.39 +0.4 5,592,733 - shiA JDDGAC_29315 0.39 -0.6 5,592,733 - shiA JDDGAC_29315 0.39 -0.2 5,592,767 - shiA JDDGAC_29315 0.42 -0.6
Or see this region's nucleotide sequence