Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaA and dnaN are separated by 4 nucleotides dnaN and recF overlap by 1 nucleotides
JDDGAC_18630: dnaA - chromosomal replication initiator protein DnaA, at 3,548,029 to 3,549,432
dnaA
JDDGAC_18640: dnaN - DNA polymerase III subunit beta, at 3,549,437 to 3,550,537
dnaN
JDDGAC_18645: recF - DNA replication/repair protein RecF, at 3,550,537 to 3,551,610
recF
Position (kb)
3549
3550
3551 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3550.535 kb on + strand at 3550.599 kb on - strand at 3550.611 kb on + strand at 3550.666 kb on + strand, within recF at 3550.666 kb on + strand, within recF at 3550.666 kb on + strand, within recF at 3550.667 kb on - strand, within recF at 3550.667 kb on - strand, within recF at 3550.667 kb on - strand, within recF at 3550.669 kb on - strand, within recF at 3550.790 kb on + strand, within recF at 3550.887 kb on - strand, within recF at 3550.903 kb on - strand, within recF at 3550.903 kb on - strand, within recF at 3550.928 kb on - strand, within recF at 3551.058 kb on - strand, within recF at 3551.122 kb on - strand, within recF at 3551.152 kb on - strand, within recF at 3551.224 kb on + strand, within recF at 3551.224 kb on + strand, within recF at 3551.225 kb on - strand, within recF at 3551.225 kb on - strand, within recF at 3551.225 kb on - strand, within recF at 3551.225 kb on - strand, within recF at 3551.245 kb on - strand, within recF at 3551.272 kb on + strand, within recF at 3551.273 kb on - strand, within recF at 3551.303 kb on + strand, within recF at 3551.304 kb on - strand, within recF at 3551.304 kb on - strand, within recF at 3551.337 kb on + strand, within recF at 3551.337 kb on + strand, within recF at 3551.337 kb on + strand, within recF at 3551.337 kb on + strand, within recF at 3551.338 kb on - strand, within recF at 3551.338 kb on - strand, within recF at 3551.338 kb on - strand, within recF at 3551.358 kb on + strand, within recF at 3551.358 kb on + strand, within recF at 3551.379 kb on - strand, within recF at 3551.432 kb on - strand, within recF at 3551.439 kb on - strand, within recF at 3551.439 kb on - strand, within recF
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 3,550,535 + -0.8 3,550,599 - -0.4 3,550,611 + -0.9 3,550,666 + recF JDDGAC_18645 0.12 +1.0 3,550,666 + recF JDDGAC_18645 0.12 +1.3 3,550,666 + recF JDDGAC_18645 0.12 -0.8 3,550,667 - recF JDDGAC_18645 0.12 -0.3 3,550,667 - recF JDDGAC_18645 0.12 -0.2 3,550,667 - recF JDDGAC_18645 0.12 +0.5 3,550,669 - recF JDDGAC_18645 0.12 -0.3 3,550,790 + recF JDDGAC_18645 0.24 -1.4 3,550,887 - recF JDDGAC_18645 0.33 +1.1 3,550,903 - recF JDDGAC_18645 0.34 +0.2 3,550,903 - recF JDDGAC_18645 0.34 +0.0 3,550,928 - recF JDDGAC_18645 0.36 +0.8 3,551,058 - recF JDDGAC_18645 0.49 +1.0 3,551,122 - recF JDDGAC_18645 0.54 +0.4 3,551,152 - recF JDDGAC_18645 0.57 -1.4 3,551,224 + recF JDDGAC_18645 0.64 -1.4 3,551,224 + recF JDDGAC_18645 0.64 +1.3 3,551,225 - recF JDDGAC_18645 0.64 -2.4 3,551,225 - recF JDDGAC_18645 0.64 -2.2 3,551,225 - recF JDDGAC_18645 0.64 -0.1 3,551,225 - recF JDDGAC_18645 0.64 +0.2 3,551,245 - recF JDDGAC_18645 0.66 +0.6 3,551,272 + recF JDDGAC_18645 0.68 +0.3 3,551,273 - recF JDDGAC_18645 0.69 +0.4 3,551,303 + recF JDDGAC_18645 0.71 -1.4 3,551,304 - recF JDDGAC_18645 0.71 +2.4 3,551,304 - recF JDDGAC_18645 0.71 +0.3 3,551,337 + recF JDDGAC_18645 0.74 +0.4 3,551,337 + recF JDDGAC_18645 0.74 -0.4 3,551,337 + recF JDDGAC_18645 0.74 +0.1 3,551,337 + recF JDDGAC_18645 0.74 -0.4 3,551,338 - recF JDDGAC_18645 0.75 -0.2 3,551,338 - recF JDDGAC_18645 0.75 -0.2 3,551,338 - recF JDDGAC_18645 0.75 -0.3 3,551,358 + recF JDDGAC_18645 0.76 +0.5 3,551,358 + recF JDDGAC_18645 0.76 +1.1 3,551,379 - recF JDDGAC_18645 0.78 -2.5 3,551,432 - recF JDDGAC_18645 0.83 +0.0 3,551,439 - recF JDDGAC_18645 0.84 -0.2 3,551,439 - recF JDDGAC_18645 0.84 -0.6
Or see this region's nucleotide sequence