Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17115

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcoaA and birA are separated by 28 nucleotidesbirA and murB overlap by 4 nucleotides JDDGAC_17110: coaA - type I pantothenate kinase, at 3,233,957 to 3,234,883 coaA JDDGAC_17115: birA - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 3,234,912 to 3,235,877 birA JDDGAC_17120: murB - UDP-N-acetylmuramate dehydrogenase, at 3,235,874 to 3,236,902 murB Position (kb) 3234 3235 3236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3233.912 kb on - strandat 3233.912 kb on - strandat 3233.932 kb on + strandat 3233.932 kb on + strandat 3233.932 kb on + strandat 3233.933 kb on - strandat 3233.933 kb on - strandat 3233.933 kb on - strandat 3233.938 kb on + strandat 3233.938 kb on + strandat 3233.938 kb on + strandat 3233.940 kb on + strandat 3235.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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3,233,912 - -3.3
3,233,912 - -3.9
3,233,932 + +0.2
3,233,932 + -0.4
3,233,932 + -0.3
3,233,933 - -1.2
3,233,933 - +1.1
3,233,933 - -0.8
3,233,938 + -0.2
3,233,938 + -0.4
3,233,938 + -0.0
3,233,940 + -0.1
3,235,869 - -0.6

Or see this region's nucleotide sequence