Strain Fitness in Escherichia coli ECRC98 around JDDGAC_13430

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_13420 and JDDGAC_13425 are separated by 180 nucleotidesJDDGAC_13425 and JDDGAC_13430 are separated by 47 nucleotidesJDDGAC_13430 and rhsA overlap by 17 nucleotides JDDGAC_13420: JDDGAC_13420 - ISAs1-like element ISEc26 family transposase, at 2,472,843 to 2,474,015 _13420 JDDGAC_13425: JDDGAC_13425 - dCTP deaminase, at 2,474,196 to 2,474,459 _13425 JDDGAC_13430: JDDGAC_13430 - YdcD, at 2,474,507 to 2,474,677 _13430 JDDGAC_13435: rhsA - type IV secretion protein Rhs, at 2,474,661 to 2,478,884 rhsA Position (kb) 2474 2475Strain fitness (log2 ratio) -1 0 1 2at 2473.635 kb on - strand, within JDDGAC_13420at 2474.243 kb on + strand, within JDDGAC_13425at 2474.363 kb on + strand, within JDDGAC_13425at 2474.446 kb on + strandat 2474.576 kb on + strand, within JDDGAC_13430at 2474.753 kb on - strandat 2474.885 kb on + strandat 2474.890 kb on - strandat 2474.990 kb on + strandat 2474.990 kb on + strandat 2474.990 kb on + strandat 2474.991 kb on - strandat 2475.017 kb on - strandat 2475.026 kb on + strandat 2475.029 kb on + strandat 2475.029 kb on + strandat 2475.029 kb on + strandat 2475.058 kb on - strandat 2475.067 kb on - strandat 2475.079 kb on - strandat 2475.095 kb on + strand, within rhsAat 2475.112 kb on - strand, within rhsAat 2475.135 kb on + strand, within rhsAat 2475.157 kb on + strand, within rhsAat 2475.157 kb on + strand, within rhsAat 2475.158 kb on - strand, within rhsAat 2475.158 kb on - strand, within rhsAat 2475.158 kb on - strand, within rhsAat 2475.161 kb on + strand, within rhsAat 2475.161 kb on + strand, within rhsAat 2475.162 kb on - strand, within rhsAat 2475.162 kb on - strand, within rhsAat 2475.200 kb on + strand, within rhsAat 2475.203 kb on - strand, within rhsAat 2475.239 kb on + strand, within rhsAat 2475.241 kb on + strand, within rhsAat 2475.242 kb on - strand, within rhsAat 2475.242 kb on - strand, within rhsAat 2475.244 kb on + strand, within rhsAat 2475.244 kb on + strand, within rhsAat 2475.320 kb on + strand, within rhsAat 2475.320 kb on + strand, within rhsAat 2475.443 kb on - strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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2,473,635 - JDDGAC_13420 0.68 +0.1
2,474,243 + JDDGAC_13425 0.18 +1.3
2,474,363 + JDDGAC_13425 0.63 +0.3
2,474,446 + -1.0
2,474,576 + JDDGAC_13430 0.40 +0.6
2,474,753 - -0.2
2,474,885 + +0.5
2,474,890 - +0.6
2,474,990 + -0.5
2,474,990 + -0.1
2,474,990 + +0.2
2,474,991 - +0.1
2,475,017 - +0.5
2,475,026 + -0.2
2,475,029 + -0.2
2,475,029 + -0.2
2,475,029 + +1.4
2,475,058 - -0.0
2,475,067 - +0.5
2,475,079 - -0.8
2,475,095 + rhsA JDDGAC_13435 0.10 +1.6
2,475,112 - rhsA JDDGAC_13435 0.11 +0.3
2,475,135 + rhsA JDDGAC_13435 0.11 -0.4
2,475,157 + rhsA JDDGAC_13435 0.12 +0.2
2,475,157 + rhsA JDDGAC_13435 0.12 -0.3
2,475,158 - rhsA JDDGAC_13435 0.12 -0.2
2,475,158 - rhsA JDDGAC_13435 0.12 -0.3
2,475,158 - rhsA JDDGAC_13435 0.12 +0.3
2,475,161 + rhsA JDDGAC_13435 0.12 -1.3
2,475,161 + rhsA JDDGAC_13435 0.12 -0.1
2,475,162 - rhsA JDDGAC_13435 0.12 -0.8
2,475,162 - rhsA JDDGAC_13435 0.12 +1.1
2,475,200 + rhsA JDDGAC_13435 0.13 -0.2
2,475,203 - rhsA JDDGAC_13435 0.13 +0.3
2,475,239 + rhsA JDDGAC_13435 0.14 +0.6
2,475,241 + rhsA JDDGAC_13435 0.14 +1.9
2,475,242 - rhsA JDDGAC_13435 0.14 +0.3
2,475,242 - rhsA JDDGAC_13435 0.14 +0.0
2,475,244 + rhsA JDDGAC_13435 0.14 -1.5
2,475,244 + rhsA JDDGAC_13435 0.14 -0.1
2,475,320 + rhsA JDDGAC_13435 0.16 +0.1
2,475,320 + rhsA JDDGAC_13435 0.16 +0.3
2,475,443 - rhsA JDDGAC_13435 0.19 -0.6

Or see this region's nucleotide sequence