Strain Fitness in Escherichia coli ECRC98 around JDDGAC_12070

Experiment: WM_TP12

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntthiI and xseB are separated by 205 nucleotidesxseB and ispA overlap by 1 nucleotidesispA and dxs are separated by 24 nucleotides JDDGAC_12060: thiI - tRNA sulfurtransferase, at 2,215,888 to 2,217,336 thiI JDDGAC_12065: xseB - exodeoxyribonuclease VII small subunit, at 2,217,542 to 2,217,784 xseB JDDGAC_12070: ispA - (2E,6E)-farnesyl diphosphate synthase, at 2,217,784 to 2,218,683 ispA JDDGAC_12075: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 2,218,708 to 2,220,570 dxs Position (kb) 2217 2218 2219Strain fitness (log2 ratio) -3 -2 -1 0 1at 2216.941 kb on + strand, within thiIat 2216.958 kb on - strand, within thiIat 2216.979 kb on + strand, within thiIat 2217.112 kb on - strand, within thiIat 2217.270 kb on + strandat 2217.322 kb on - strandat 2217.322 kb on - strandat 2217.328 kb on - strandat 2217.364 kb on - strandat 2217.364 kb on - strandat 2217.374 kb on + strandat 2217.375 kb on - strandat 2217.375 kb on - strandat 2217.375 kb on - strandat 2217.386 kb on + strandat 2217.426 kb on + strandat 2217.462 kb on + strandat 2217.475 kb on + strandat 2217.476 kb on - strandat 2217.541 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
remove
2,216,941 + thiI JDDGAC_12060 0.73 -0.9
2,216,958 - thiI JDDGAC_12060 0.74 -0.1
2,216,979 + thiI JDDGAC_12060 0.75 +0.8
2,217,112 - thiI JDDGAC_12060 0.84 +0.4
2,217,270 + -0.2
2,217,322 - -3.6
2,217,322 - -0.1
2,217,328 - -2.0
2,217,364 - +1.0
2,217,364 - -0.1
2,217,374 + -1.1
2,217,375 - -0.4
2,217,375 - -0.3
2,217,375 - -0.3
2,217,386 + -1.2
2,217,426 + +0.2
2,217,462 + -0.1
2,217,475 + +0.2
2,217,476 - -0.9
2,217,541 + -1.8

Or see this region's nucleotide sequence