Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11355

Experiment: WM_TP12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_TP12
2,046,832	+	ibeB	JDDGAC_11345	0.89	+0.5
2,046,836	+	ibeB	JDDGAC_11345	0.90	-1.0
2,046,836	+	ibeB	JDDGAC_11345	0.90	-0.1
2,046,977	+				-0.0
2,047,103	+				-1.9
2,047,176	+				+0.4
2,047,176	+				-0.5
2,047,177	-				+1.5
2,047,177	-				-0.2
2,047,289	+	cusR	JDDGAC_11350	0.23	-0.5
2,047,343	+	cusR	JDDGAC_11350	0.31	-0.5
2,047,425	+	cusR	JDDGAC_11350	0.43	-2.7
2,047,788	+				-1.2
2,047,788	+				-0.5
2,047,788	+				+0.3
2,047,789	-				+0.5
2,047,923	-				+0.3
2,047,969	-	cusS	JDDGAC_11355	0.11	-0.7
2,048,057	-	cusS	JDDGAC_11355	0.17	+1.1
2,048,101	+	cusS	JDDGAC_11355	0.20	-0.2
2,048,101	+	cusS	JDDGAC_11355	0.20	-0.4
2,048,299	+	cusS	JDDGAC_11355	0.34	+0.3
2,048,301	+	cusS	JDDGAC_11355	0.34	+0.8
2,048,301	+	cusS	JDDGAC_11355	0.34	-0.2
2,048,301	+	cusS	JDDGAC_11355	0.34	-0.0
2,048,341	+	cusS	JDDGAC_11355	0.37	+0.4
2,048,341	+	cusS	JDDGAC_11355	0.37	+0.5
2,048,341	+	cusS	JDDGAC_11355	0.37	-0.6
2,048,342	-	cusS	JDDGAC_11355	0.37	+0.4
2,048,346	-	cusS	JDDGAC_11355	0.37	-0.0
2,048,361	+	cusS	JDDGAC_11355	0.38	-2.0
2,048,367	+	cusS	JDDGAC_11355	0.39	+0.5
2,048,370	+	cusS	JDDGAC_11355	0.39	-0.7
2,048,371	-	cusS	JDDGAC_11355	0.39	+0.6
2,048,371	-	cusS	JDDGAC_11355	0.39	+0.8
2,048,371	-	cusS	JDDGAC_11355	0.39	-1.7
2,048,557	-	cusS	JDDGAC_11355	0.52	+0.4
2,048,640	+	cusS	JDDGAC_11355	0.57	-1.6
2,048,641	-	cusS	JDDGAC_11355	0.58	-1.0
2,048,710	+	cusS	JDDGAC_11355	0.62	+0.2
2,048,716	-	cusS	JDDGAC_11355	0.63	+0.4
2,048,757	+	cusS	JDDGAC_11355	0.66	-0.4
2,048,758	-	cusS	JDDGAC_11355	0.66	-1.4
2,048,975	-	cusS	JDDGAC_11355	0.81	-0.8
2,048,975	-	cusS	JDDGAC_11355	0.81	+0.6
2,048,976	+	cusS	JDDGAC_11355	0.81	-0.7
2,048,976	+	cusS	JDDGAC_11355	0.81	-0.9
2,048,999	+	cusS	JDDGAC_11355	0.82	-0.3
2,049,000	-	cusS	JDDGAC_11355	0.82	-0.5
2,049,811	+				-0.0
2,049,849	-				-0.1
2,050,023	+				-1.7
2,050,052	-	vgrG	JDDGAC_11360	0.11	+0.3
2,050,119	+	vgrG	JDDGAC_11360	0.14	+0.2
2,050,119	+	vgrG	JDDGAC_11360	0.14	+2.4