Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt citC and JDDGAC_11095 are separated by 14 nucleotides JDDGAC_11095 and citE overlap by 4 nucleotides citE and citF are separated by 10 nucleotides
JDDGAC_11090: citC - [citrate (pro-3S)-lyase] ligase, at 1,992,026 to 1,993,084
citC
JDDGAC_11095: JDDGAC_11095 - citrate lyase acyl carrier protein 1, at 1,993,099 to 1,993,395
_11095
JDDGAC_11100: citE - citrate (pro-3S)-lyase subunit beta, at 1,993,392 to 1,994,300
citE
JDDGAC_11105: citF - citrate lyase subunit alpha, at 1,994,311 to 1,995,843
citF
Position (kb) 1993
1994 Strain fitness (log2 ratio) -2
-1
0
1 at 1992.138 kb on + strand, within citC at 1992.143 kb on - strand, within citC at 1992.196 kb on + strand, within citC at 1992.196 kb on + strand, within citC at 1992.202 kb on + strand, within citC at 1992.311 kb on + strand, within citC at 1992.422 kb on + strand, within citC at 1992.496 kb on + strand, within citC at 1992.665 kb on + strand, within citC at 1992.695 kb on + strand, within citC at 1992.695 kb on + strand, within citC at 1992.696 kb on - strand, within citC at 1992.696 kb on - strand, within citC at 1992.731 kb on + strand, within citC at 1992.731 kb on + strand, within citC at 1992.732 kb on - strand, within citC at 1992.836 kb on + strand, within citC at 1992.837 kb on - strand, within citC at 1993.155 kb on - strand, within JDDGAC_11095 at 1993.323 kb on - strand, within JDDGAC_11095 at 1993.323 kb on - strand, within JDDGAC_11095 at 1993.492 kb on - strand, within citE at 1993.593 kb on + strand, within citE at 1993.690 kb on + strand, within citE at 1993.690 kb on + strand, within citE at 1993.691 kb on - strand, within citE at 1993.691 kb on - strand, within citE at 1993.753 kb on + strand, within citE at 1993.890 kb on + strand, within citE at 1993.890 kb on + strand, within citE at 1993.891 kb on - strand, within citE at 1993.891 kb on - strand, within citE at 1994.164 kb on + strand, within citE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 1,992,138 + citC JDDGAC_11090 0.11 +0.1 1,992,143 - citC JDDGAC_11090 0.11 +0.4 1,992,196 + citC JDDGAC_11090 0.16 +0.3 1,992,196 + citC JDDGAC_11090 0.16 -1.8 1,992,202 + citC JDDGAC_11090 0.17 +1.6 1,992,311 + citC JDDGAC_11090 0.27 +0.9 1,992,422 + citC JDDGAC_11090 0.37 +0.2 1,992,496 + citC JDDGAC_11090 0.44 -0.1 1,992,665 + citC JDDGAC_11090 0.60 +0.5 1,992,695 + citC JDDGAC_11090 0.63 -0.1 1,992,695 + citC JDDGAC_11090 0.63 -1.8 1,992,696 - citC JDDGAC_11090 0.63 -1.0 1,992,696 - citC JDDGAC_11090 0.63 +0.5 1,992,731 + citC JDDGAC_11090 0.67 +0.7 1,992,731 + citC JDDGAC_11090 0.67 +0.1 1,992,732 - citC JDDGAC_11090 0.67 +1.0 1,992,836 + citC JDDGAC_11090 0.76 -0.3 1,992,837 - citC JDDGAC_11090 0.77 +0.6 1,993,155 - JDDGAC_11095 0.19 -0.1 1,993,323 - JDDGAC_11095 0.75 -0.2 1,993,323 - JDDGAC_11095 0.75 -0.6 1,993,492 - citE JDDGAC_11100 0.11 +1.3 1,993,593 + citE JDDGAC_11100 0.22 -0.4 1,993,690 + citE JDDGAC_11100 0.33 +0.4 1,993,690 + citE JDDGAC_11100 0.33 +1.0 1,993,691 - citE JDDGAC_11100 0.33 -0.9 1,993,691 - citE JDDGAC_11100 0.33 -2.1 1,993,753 + citE JDDGAC_11100 0.40 -0.7 1,993,890 + citE JDDGAC_11100 0.55 -0.0 1,993,890 + citE JDDGAC_11100 0.55 -0.3 1,993,891 - citE JDDGAC_11100 0.55 +0.4 1,993,891 - citE JDDGAC_11100 0.55 +1.3 1,994,164 + citE JDDGAC_11100 0.85 +0.4
Or see this region's nucleotide sequence