Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07620

Experiment: WM_TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeP and JDDGAC_07620 are separated by 328 nucleotidesJDDGAC_07620 and JDDGAC_07625 are separated by 213 nucleotidesJDDGAC_07625 and JDDGAC_07630 overlap by 4 nucleotidesJDDGAC_07630 and JDDGAC_07635 are separated by 53 nucleotides JDDGAC_07615: yeeP - 50S ribosome-binding GTPase, at 1,321,143 to 1,322,015 yeeP JDDGAC_07620: JDDGAC_07620 - hypothetical protein, at 1,322,344 to 1,322,526 _07620 JDDGAC_07625: JDDGAC_07625 - IS66 transposase, at 1,322,740 to 1,322,829 _07625 JDDGAC_07630: JDDGAC_07630 - putative transposase of insertion sequence IS682, at 1,322,826 to 1,323,251 _07630 JDDGAC_07635: JDDGAC_07635 - Integrase catalytic domain-containing protein, at 1,323,305 to 1,323,553 _07635 Position (kb) 1322 1323Strain fitness (log2 ratio) -3 -2 -1 0 1at 1321.515 kb on - strand, within yeePat 1321.599 kb on + strand, within yeePat 1321.615 kb on + strand, within yeePat 1321.705 kb on + strand, within yeePat 1321.706 kb on - strand, within yeePat 1321.872 kb on - strand, within yeePat 1321.886 kb on + strand, within yeePat 1321.892 kb on + strand, within yeePat 1322.015 kb on + strandat 1322.015 kb on + strandat 1322.015 kb on + strandat 1322.015 kb on + strandat 1322.016 kb on - strandat 1322.016 kb on - strandat 1322.016 kb on - strandat 1322.022 kb on - strandat 1322.022 kb on - strandat 1322.087 kb on - strandat 1322.189 kb on + strandat 1322.192 kb on - strandat 1322.257 kb on - strandat 1322.419 kb on + strand, within JDDGAC_07620at 1322.676 kb on + strandat 1322.676 kb on + strandat 1322.746 kb on + strandat 1322.746 kb on + strandat 1322.769 kb on + strand, within JDDGAC_07625at 1322.770 kb on - strand, within JDDGAC_07625at 1323.016 kb on - strand, within JDDGAC_07630at 1323.016 kb on - strand, within JDDGAC_07630at 1323.025 kb on - strand, within JDDGAC_07630at 1323.073 kb on - strand, within JDDGAC_07630at 1323.073 kb on - strand, within JDDGAC_07630at 1323.075 kb on - strand, within JDDGAC_07630at 1323.188 kb on + strand, within JDDGAC_07630at 1323.243 kb on + strandat 1323.252 kb on - strandat 1323.255 kb on + strandat 1323.255 kb on + strandat 1323.256 kb on - strandat 1323.315 kb on - strandat 1323.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP12
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1,321,515 - yeeP JDDGAC_07615 0.43 +0.5
1,321,599 + yeeP JDDGAC_07615 0.52 -2.8
1,321,615 + yeeP JDDGAC_07615 0.54 +0.0
1,321,705 + yeeP JDDGAC_07615 0.64 -0.1
1,321,706 - yeeP JDDGAC_07615 0.64 -1.0
1,321,872 - yeeP JDDGAC_07615 0.84 +0.7
1,321,886 + yeeP JDDGAC_07615 0.85 -0.5
1,321,892 + yeeP JDDGAC_07615 0.86 +0.3
1,322,015 + -0.5
1,322,015 + +0.2
1,322,015 + +0.7
1,322,015 + +0.5
1,322,016 - -0.6
1,322,016 - +0.2
1,322,016 - +0.8
1,322,022 - -0.7
1,322,022 - +0.1
1,322,087 - -0.2
1,322,189 + +1.1
1,322,192 - +0.2
1,322,257 - +0.0
1,322,419 + JDDGAC_07620 0.41 +1.1
1,322,676 + -0.5
1,322,676 + +1.7
1,322,746 + -2.3
1,322,746 + +0.0
1,322,769 + JDDGAC_07625 0.32 -1.9
1,322,770 - JDDGAC_07625 0.33 +0.7
1,323,016 - JDDGAC_07630 0.45 -1.0
1,323,016 - JDDGAC_07630 0.45 -1.0
1,323,025 - JDDGAC_07630 0.47 +0.8
1,323,073 - JDDGAC_07630 0.58 +0.7
1,323,073 - JDDGAC_07630 0.58 -1.1
1,323,075 - JDDGAC_07630 0.58 -1.6
1,323,188 + JDDGAC_07630 0.85 +0.5
1,323,243 + +0.1
1,323,252 - +0.5
1,323,255 + -0.5
1,323,255 + -1.7
1,323,256 - +0.2
1,323,315 - -0.4
1,323,329 - -0.4

Or see this region's nucleotide sequence