Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeP and JDDGAC_07620 are separated by 328 nucleotides JDDGAC_07620 and JDDGAC_07625 are separated by 213 nucleotides JDDGAC_07625 and JDDGAC_07630 overlap by 4 nucleotides JDDGAC_07630 and JDDGAC_07635 are separated by 53 nucleotides
JDDGAC_07615: yeeP - 50S ribosome-binding GTPase, at 1,321,143 to 1,322,015
yeeP
JDDGAC_07620: JDDGAC_07620 - hypothetical protein, at 1,322,344 to 1,322,526
_07620
JDDGAC_07625: JDDGAC_07625 - IS66 transposase, at 1,322,740 to 1,322,829
_07625
JDDGAC_07630: JDDGAC_07630 - putative transposase of insertion sequence IS682, at 1,322,826 to 1,323,251
_07630
JDDGAC_07635: JDDGAC_07635 - Integrase catalytic domain-containing protein, at 1,323,305 to 1,323,553
_07635
Position (kb)
1322
1323 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1321.515 kb on - strand, within yeeP at 1321.599 kb on + strand, within yeeP at 1321.615 kb on + strand, within yeeP at 1321.705 kb on + strand, within yeeP at 1321.706 kb on - strand, within yeeP at 1321.872 kb on - strand, within yeeP at 1321.886 kb on + strand, within yeeP at 1321.892 kb on + strand, within yeeP at 1322.015 kb on + strand at 1322.015 kb on + strand at 1322.015 kb on + strand at 1322.015 kb on + strand at 1322.016 kb on - strand at 1322.016 kb on - strand at 1322.016 kb on - strand at 1322.022 kb on - strand at 1322.022 kb on - strand at 1322.087 kb on - strand at 1322.189 kb on + strand at 1322.192 kb on - strand at 1322.257 kb on - strand at 1322.419 kb on + strand, within JDDGAC_07620 at 1322.676 kb on + strand at 1322.676 kb on + strand at 1322.746 kb on + strand at 1322.746 kb on + strand at 1322.769 kb on + strand, within JDDGAC_07625 at 1322.770 kb on - strand, within JDDGAC_07625 at 1323.016 kb on - strand, within JDDGAC_07630 at 1323.016 kb on - strand, within JDDGAC_07630 at 1323.025 kb on - strand, within JDDGAC_07630 at 1323.073 kb on - strand, within JDDGAC_07630 at 1323.073 kb on - strand, within JDDGAC_07630 at 1323.075 kb on - strand, within JDDGAC_07630 at 1323.188 kb on + strand, within JDDGAC_07630 at 1323.243 kb on + strand at 1323.252 kb on - strand at 1323.255 kb on + strand at 1323.255 kb on + strand at 1323.256 kb on - strand at 1323.315 kb on - strand at 1323.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 1,321,515 - yeeP JDDGAC_07615 0.43 +0.5 1,321,599 + yeeP JDDGAC_07615 0.52 -2.8 1,321,615 + yeeP JDDGAC_07615 0.54 +0.0 1,321,705 + yeeP JDDGAC_07615 0.64 -0.1 1,321,706 - yeeP JDDGAC_07615 0.64 -1.0 1,321,872 - yeeP JDDGAC_07615 0.84 +0.7 1,321,886 + yeeP JDDGAC_07615 0.85 -0.5 1,321,892 + yeeP JDDGAC_07615 0.86 +0.3 1,322,015 + -0.5 1,322,015 + +0.2 1,322,015 + +0.7 1,322,015 + +0.5 1,322,016 - -0.6 1,322,016 - +0.2 1,322,016 - +0.8 1,322,022 - -0.7 1,322,022 - +0.1 1,322,087 - -0.2 1,322,189 + +1.1 1,322,192 - +0.2 1,322,257 - +0.0 1,322,419 + JDDGAC_07620 0.41 +1.1 1,322,676 + -0.5 1,322,676 + +1.7 1,322,746 + -2.3 1,322,746 + +0.0 1,322,769 + JDDGAC_07625 0.32 -1.9 1,322,770 - JDDGAC_07625 0.33 +0.7 1,323,016 - JDDGAC_07630 0.45 -1.0 1,323,016 - JDDGAC_07630 0.45 -1.0 1,323,025 - JDDGAC_07630 0.47 +0.8 1,323,073 - JDDGAC_07630 0.58 +0.7 1,323,073 - JDDGAC_07630 0.58 -1.1 1,323,075 - JDDGAC_07630 0.58 -1.6 1,323,188 + JDDGAC_07630 0.85 +0.5 1,323,243 + +0.1 1,323,252 - +0.5 1,323,255 + -0.5 1,323,255 + -1.7 1,323,256 - +0.2 1,323,315 - -0.4 1,323,329 - -0.4
Or see this region's nucleotide sequence