Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gp36 and gp37 overlap by 4 nucleotides gp37 and JDDGAC_05680 are separated by 0 nucleotides JDDGAC_05680 and gpL overlap by 4 nucleotides gpL and JDDGAC_05690 are separated by 8 nucleotides JDDGAC_05690 and gp41 are separated by 14 nucleotides gp41 and hI1514 are separated by 126 nucleotides
JDDGAC_05670: gp36 - Bacteriophage Mu, Gp36, at 988,514 to 988,933
gp36
JDDGAC_05675: gp37 - DUF1834 domain-containing protein, at 988,930 to 989,490
gp37
JDDGAC_05680: JDDGAC_05680 - DUF2635 domain-containing protein, at 989,491 to 989,736
_05680
JDDGAC_05685: gpL - phage tail protein, at 989,733 to 991,235
gpL
JDDGAC_05690: JDDGAC_05690 - phage tail protein, at 991,244 to 991,609
_05690
JDDGAC_05695: gp41 - Phage tail assembly chaperone proteins, E, or 41 or 14, at 991,624 to 992,100
gp41
JDDGAC_05700: hI1514 - tail tape measure protein, at 992,227 to 994,302
hI1514
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 988.739 kb on + strand, within gp36 at 988.929 kb on + strand at 988.930 kb on - strand at 988.936 kb on - strand at 988.954 kb on + strand at 988.954 kb on + strand at 988.954 kb on + strand at 988.954 kb on + strand at 988.955 kb on - strand at 988.955 kb on - strand at 989.068 kb on + strand, within gp37 at 989.068 kb on + strand, within gp37 at 989.068 kb on + strand, within gp37 at 989.069 kb on - strand, within gp37 at 989.134 kb on + strand, within gp37 at 989.134 kb on + strand, within gp37 at 989.251 kb on + strand, within gp37 at 989.311 kb on + strand, within gp37 at 989.320 kb on + strand, within gp37 at 989.320 kb on + strand, within gp37 at 989.436 kb on + strand at 989.437 kb on - strand at 989.437 kb on - strand at 989.437 kb on - strand at 989.795 kb on + strand at 990.125 kb on + strand, within gpL at 990.125 kb on + strand, within gpL at 990.325 kb on - strand, within gpL at 990.325 kb on - strand, within gpL at 990.365 kb on + strand, within gpL at 990.439 kb on - strand, within gpL at 990.439 kb on - strand, within gpL at 990.444 kb on + strand, within gpL at 990.444 kb on + strand, within gpL at 990.459 kb on + strand, within gpL at 990.461 kb on + strand, within gpL at 990.649 kb on - strand, within gpL at 990.782 kb on + strand, within gpL at 990.782 kb on + strand, within gpL at 990.865 kb on - strand, within gpL at 990.865 kb on - strand, within gpL at 990.865 kb on - strand, within gpL at 991.171 kb on + strand at 991.239 kb on - strand at 991.319 kb on - strand, within JDDGAC_05690 at 991.319 kb on - strand, within JDDGAC_05690 at 991.370 kb on + strand, within JDDGAC_05690 at 991.371 kb on - strand, within JDDGAC_05690 at 991.745 kb on - strand, within gp41 at 991.827 kb on + strand, within gp41 at 991.985 kb on + strand, within gp41 at 991.986 kb on - strand, within gp41 at 991.986 kb on - strand, within gp41 at 992.222 kb on + strand at 992.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 988,739 + gp36 JDDGAC_05670 0.54 +0.5 988,929 + +0.3 988,930 - -0.5 988,936 - -0.0 988,954 + +0.3 988,954 + +3.1 988,954 + +0.8 988,954 + +0.3 988,955 - +0.5 988,955 - +0.6 989,068 + gp37 JDDGAC_05675 0.25 +3.5 989,068 + gp37 JDDGAC_05675 0.25 +0.7 989,068 + gp37 JDDGAC_05675 0.25 +1.0 989,069 - gp37 JDDGAC_05675 0.25 +1.0 989,134 + gp37 JDDGAC_05675 0.36 +0.2 989,134 + gp37 JDDGAC_05675 0.36 -1.0 989,251 + gp37 JDDGAC_05675 0.57 +0.1 989,311 + gp37 JDDGAC_05675 0.68 +0.3 989,320 + gp37 JDDGAC_05675 0.70 -0.0 989,320 + gp37 JDDGAC_05675 0.70 +0.4 989,436 + +0.5 989,437 - +1.2 989,437 - -0.3 989,437 - -0.0 989,795 + +0.9 990,125 + gpL JDDGAC_05685 0.26 +0.2 990,125 + gpL JDDGAC_05685 0.26 -0.1 990,325 - gpL JDDGAC_05685 0.39 -1.1 990,325 - gpL JDDGAC_05685 0.39 -0.2 990,365 + gpL JDDGAC_05685 0.42 +0.7 990,439 - gpL JDDGAC_05685 0.47 -0.0 990,439 - gpL JDDGAC_05685 0.47 -0.4 990,444 + gpL JDDGAC_05685 0.47 -1.2 990,444 + gpL JDDGAC_05685 0.47 +1.4 990,459 + gpL JDDGAC_05685 0.48 +1.9 990,461 + gpL JDDGAC_05685 0.48 +0.7 990,649 - gpL JDDGAC_05685 0.61 +0.5 990,782 + gpL JDDGAC_05685 0.70 -0.6 990,782 + gpL JDDGAC_05685 0.70 -3.6 990,865 - gpL JDDGAC_05685 0.75 -2.1 990,865 - gpL JDDGAC_05685 0.75 +2.3 990,865 - gpL JDDGAC_05685 0.75 -1.0 991,171 + -2.9 991,239 - +0.6 991,319 - JDDGAC_05690 0.20 -1.6 991,319 - JDDGAC_05690 0.20 -1.1 991,370 + JDDGAC_05690 0.34 +0.2 991,371 - JDDGAC_05690 0.35 -1.8 991,745 - gp41 JDDGAC_05695 0.25 +0.1 991,827 + gp41 JDDGAC_05695 0.43 +0.6 991,985 + gp41 JDDGAC_05695 0.76 -1.4 991,986 - gp41 JDDGAC_05695 0.76 +0.2 991,986 - gp41 JDDGAC_05695 0.76 -2.4 992,222 + +0.5 992,222 + +0.5
Or see this region's nucleotide sequence