Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yciQ and yciO are separated by 27 nucleotides yciO and yciV overlap by 4 nucleotides yciV and trpL are separated by 137 nucleotides trpL and trpE are separated by 91 nucleotides
JDDGAC_05180: yciQ - Uncharacterized protein YciQ, at 910,560 to 912,143
yciQ
JDDGAC_05185: yciO - L-threonylcarbamoyladenylate synthase, at 912,171 to 912,791
yciO
JDDGAC_05190: yciV - 5'-3' exoribonuclease, at 912,788 to 913,669
yciV
JDDGAC_05195: trpL - trp operon leader peptide, at 913,807 to 913,851
trpL
JDDGAC_05200: trpE - anthranilate synthase component I, at 913,943 to 915,505
trpE
Position (kb) 912
913
914 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 912.053 kb on - strand at 912.053 kb on - strand at 912.080 kb on - strand at 912.172 kb on + strand at 912.173 kb on - strand at 912.174 kb on + strand at 912.196 kb on - strand at 912.221 kb on + strand at 912.432 kb on - strand, within yciO at 912.500 kb on + strand, within yciO at 912.500 kb on + strand, within yciO at 912.502 kb on + strand, within yciO at 912.502 kb on + strand, within yciO at 912.502 kb on + strand, within yciO at 912.503 kb on - strand, within yciO at 912.503 kb on - strand, within yciO at 912.503 kb on - strand, within yciO at 912.744 kb on + strand at 912.745 kb on - strand at 912.792 kb on - strand at 912.868 kb on + strand at 912.926 kb on + strand, within yciV at 913.052 kb on - strand, within yciV at 913.083 kb on - strand, within yciV at 913.083 kb on - strand, within yciV at 913.083 kb on - strand, within yciV at 913.187 kb on - strand, within yciV at 913.302 kb on - strand, within yciV at 913.302 kb on - strand, within yciV at 913.397 kb on - strand, within yciV at 913.653 kb on + strand at 913.654 kb on - strand at 913.728 kb on + strand at 913.938 kb on + strand at 913.938 kb on + strand at 913.938 kb on + strand at 914.068 kb on + strand at 914.126 kb on - strand, within trpE at 914.191 kb on - strand, within trpE at 914.396 kb on + strand, within trpE at 914.396 kb on + strand, within trpE at 914.397 kb on - strand, within trpE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 912,053 - -1.7 912,053 - -1.2 912,080 - -0.3 912,172 + -0.9 912,173 - +0.4 912,174 + +0.8 912,196 - +0.1 912,221 + -0.4 912,432 - yciO JDDGAC_05185 0.42 +0.5 912,500 + yciO JDDGAC_05185 0.53 -0.4 912,500 + yciO JDDGAC_05185 0.53 +0.8 912,502 + yciO JDDGAC_05185 0.53 -0.3 912,502 + yciO JDDGAC_05185 0.53 +0.3 912,502 + yciO JDDGAC_05185 0.53 +0.8 912,503 - yciO JDDGAC_05185 0.53 -0.2 912,503 - yciO JDDGAC_05185 0.53 +0.8 912,503 - yciO JDDGAC_05185 0.53 -0.3 912,744 + -0.1 912,745 - +1.0 912,792 - +0.2 912,868 + -1.9 912,926 + yciV JDDGAC_05190 0.16 +0.3 913,052 - yciV JDDGAC_05190 0.30 -1.9 913,083 - yciV JDDGAC_05190 0.33 -1.9 913,083 - yciV JDDGAC_05190 0.33 +0.7 913,083 - yciV JDDGAC_05190 0.33 +1.3 913,187 - yciV JDDGAC_05190 0.45 -0.2 913,302 - yciV JDDGAC_05190 0.58 -0.1 913,302 - yciV JDDGAC_05190 0.58 +2.9 913,397 - yciV JDDGAC_05190 0.69 +0.6 913,653 + -0.2 913,654 - -0.0 913,728 + -0.2 913,938 + +0.4 913,938 + -0.6 913,938 + -0.4 914,068 + +1.1 914,126 - trpE JDDGAC_05200 0.12 +0.3 914,191 - trpE JDDGAC_05200 0.16 -0.7 914,396 + trpE JDDGAC_05200 0.29 +0.2 914,396 + trpE JDDGAC_05200 0.29 -0.5 914,397 - trpE JDDGAC_05200 0.29 -0.5
Or see this region's nucleotide sequence