Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dosP and ddpX are separated by 257 nucleotides ddpX and ddpA are separated by 13 nucleotides ddpA and ddpB are separated by 1 nucleotides
JDDGAC_03800: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 653,469 to 654,620
dosP
JDDGAC_03805: ddpX - D-alanyl-D-alanine dipeptidase, at 654,878 to 655,459
ddpX
JDDGAC_03810: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 655,473 to 657,023
ddpA
JDDGAC_03815: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 657,025 to 658,047
ddpB
Position (kb) 655
656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2 at 654.546 kb on + strand at 654.788 kb on + strand at 654.864 kb on + strand at 654.864 kb on + strand at 654.971 kb on - strand, within ddpX at 654.977 kb on - strand, within ddpX at 655.062 kb on + strand, within ddpX at 655.062 kb on + strand, within ddpX at 655.062 kb on + strand, within ddpX at 655.139 kb on + strand, within ddpX at 655.429 kb on + strand at 655.431 kb on + strand at 655.562 kb on + strand at 655.563 kb on - strand at 655.618 kb on + strand at 655.619 kb on - strand at 655.619 kb on - strand at 655.654 kb on - strand, within ddpA at 655.725 kb on - strand, within ddpA at 655.775 kb on + strand, within ddpA at 655.776 kb on - strand, within ddpA at 655.782 kb on - strand, within ddpA at 655.819 kb on + strand, within ddpA at 655.923 kb on - strand, within ddpA at 656.133 kb on - strand, within ddpA at 656.287 kb on - strand, within ddpA at 656.307 kb on + strand, within ddpA at 656.307 kb on + strand, within ddpA at 656.308 kb on - strand, within ddpA at 656.308 kb on - strand, within ddpA at 656.339 kb on + strand, within ddpA at 656.482 kb on - strand, within ddpA at 656.733 kb on + strand, within ddpA at 656.733 kb on + strand, within ddpA at 656.734 kb on - strand, within ddpA at 656.734 kb on - strand, within ddpA at 656.734 kb on - strand, within ddpA at 656.734 kb on - strand, within ddpA at 656.735 kb on + strand, within ddpA at 656.735 kb on + strand, within ddpA at 656.910 kb on + strand at 656.911 kb on - strand at 656.911 kb on - strand at 656.916 kb on + strand at 656.916 kb on + strand at 656.935 kb on - strand at 657.021 kb on + strand at 657.022 kb on - strand at 657.097 kb on - strand at 657.169 kb on - strand, within ddpB at 657.215 kb on - strand, within ddpB at 657.219 kb on - strand, within ddpB at 657.306 kb on + strand, within ddpB at 657.431 kb on + strand, within ddpB at 657.512 kb on + strand, within ddpB at 657.727 kb on + strand, within ddpB at 657.776 kb on + strand, within ddpB at 657.776 kb on + strand, within ddpB at 657.777 kb on - strand, within ddpB at 657.777 kb on - strand, within ddpB at 657.777 kb on - strand, within ddpB at 657.914 kb on + strand, within ddpB at 657.914 kb on + strand, within ddpB at 658.003 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 654,546 + -0.1 654,788 + -1.5 654,864 + +0.5 654,864 + +0.0 654,971 - ddpX JDDGAC_03805 0.16 -0.2 654,977 - ddpX JDDGAC_03805 0.17 -1.3 655,062 + ddpX JDDGAC_03805 0.32 +0.7 655,062 + ddpX JDDGAC_03805 0.32 -0.6 655,062 + ddpX JDDGAC_03805 0.32 -0.6 655,139 + ddpX JDDGAC_03805 0.45 +1.1 655,429 + -1.8 655,431 + -1.3 655,562 + -0.1 655,563 - +1.3 655,618 + +0.7 655,619 - +0.4 655,619 - +0.7 655,654 - ddpA JDDGAC_03810 0.12 +0.2 655,725 - ddpA JDDGAC_03810 0.16 -0.6 655,775 + ddpA JDDGAC_03810 0.19 -0.6 655,776 - ddpA JDDGAC_03810 0.20 +0.2 655,782 - ddpA JDDGAC_03810 0.20 -2.5 655,819 + ddpA JDDGAC_03810 0.22 +0.6 655,923 - ddpA JDDGAC_03810 0.29 -0.0 656,133 - ddpA JDDGAC_03810 0.43 +1.9 656,287 - ddpA JDDGAC_03810 0.52 +0.7 656,307 + ddpA JDDGAC_03810 0.54 -0.5 656,307 + ddpA JDDGAC_03810 0.54 +0.2 656,308 - ddpA JDDGAC_03810 0.54 +0.5 656,308 - ddpA JDDGAC_03810 0.54 -1.7 656,339 + ddpA JDDGAC_03810 0.56 +0.6 656,482 - ddpA JDDGAC_03810 0.65 -0.0 656,733 + ddpA JDDGAC_03810 0.81 -1.7 656,733 + ddpA JDDGAC_03810 0.81 -0.0 656,734 - ddpA JDDGAC_03810 0.81 -1.5 656,734 - ddpA JDDGAC_03810 0.81 +1.9 656,734 - ddpA JDDGAC_03810 0.81 +1.0 656,734 - ddpA JDDGAC_03810 0.81 +0.6 656,735 + ddpA JDDGAC_03810 0.81 -1.4 656,735 + ddpA JDDGAC_03810 0.81 +0.8 656,910 + +0.3 656,911 - -1.5 656,911 - -2.2 656,916 + +0.3 656,916 + +0.3 656,935 - -0.3 657,021 + -1.2 657,022 - -1.1 657,097 - +0.1 657,169 - ddpB JDDGAC_03815 0.14 -0.2 657,215 - ddpB JDDGAC_03815 0.19 -0.9 657,219 - ddpB JDDGAC_03815 0.19 -0.3 657,306 + ddpB JDDGAC_03815 0.27 -0.5 657,431 + ddpB JDDGAC_03815 0.40 +1.7 657,512 + ddpB JDDGAC_03815 0.48 -0.1 657,727 + ddpB JDDGAC_03815 0.69 +0.1 657,776 + ddpB JDDGAC_03815 0.73 -0.1 657,776 + ddpB JDDGAC_03815 0.73 +0.3 657,777 - ddpB JDDGAC_03815 0.74 +2.2 657,777 - ddpB JDDGAC_03815 0.74 +0.9 657,777 - ddpB JDDGAC_03815 0.74 -0.3 657,914 + ddpB JDDGAC_03815 0.87 -2.7 657,914 + ddpB JDDGAC_03815 0.87 +0.3 658,003 + +0.8
Or see this region's nucleotide sequence