Experiment: WM_TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt quuQ and Ile2_trna are separated by 502 nucleotides Ile2_trna and Arg_trna are separated by 7 nucleotides Arg_trna and Arg_trna are separated by 13 nucleotides Arg_trna and JDDGAC_03310 are separated by 90 nucleotides JDDGAC_03310 and JDDGAC_03315 are separated by 52 nucleotides JDDGAC_03315 and terB are separated by 189 nucleotides terB and JDDGAC_03325 overlap by 4 nucleotides
JDDGAC_03290: quuQ - Prophage antitermination Q-like protein QuuQ, at 549,450 to 550,202
quuQ
JDDGAC_03295: Ile2_trna - tRNA-Ile2(cat), at 550,705 to 550,780
_trna
JDDGAC_03300: Arg_trna - tRNA-Arg(tcg), at 550,788 to 550,864
_trna
JDDGAC_03305: Arg_trna - tRNA-Arg(tct), at 550,878 to 550,954
_trna
JDDGAC_03310: JDDGAC_03310 - hypothetical protein, at 551,045 to 551,269
_03310
JDDGAC_03315: JDDGAC_03315 - hypothetical protein, at 551,322 to 551,531
_03315
JDDGAC_03320: terB - tellurite resistance protein, at 551,721 to 552,152
terB
JDDGAC_03325: JDDGAC_03325 - DUF3927 domain-containing protein, at 552,149 to 552,316
_03325
Position (kb) 551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.283 kb on + strand at 550.283 kb on + strand at 550.283 kb on + strand at 550.283 kb on + strand at 550.284 kb on - strand at 550.284 kb on - strand at 550.885 kb on + strand at 550.886 kb on - strand, within Arg_trna at 550.955 kb on + strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.119 kb on - strand, within JDDGAC_03310 at 551.133 kb on + strand, within JDDGAC_03310 at 551.264 kb on + strand at 551.288 kb on + strand at 551.293 kb on + strand at 551.317 kb on + strand at 551.351 kb on + strand, within JDDGAC_03315 at 551.468 kb on + strand, within JDDGAC_03315 at 551.560 kb on - strand at 551.590 kb on + strand at 551.807 kb on + strand, within terB at 551.818 kb on - strand, within terB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP12 remove 550,283 + +0.9 550,283 + +0.2 550,283 + -0.7 550,283 + -0.6 550,284 - +0.9 550,284 - -1.9 550,885 + +1.8 550,886 - Arg_trna JDDGAC_03305 0.10 -1.1 550,955 + +0.9 551,012 - -0.3 551,012 - +0.9 551,119 - JDDGAC_03310 0.33 +1.5 551,133 + JDDGAC_03310 0.39 -0.3 551,264 + -0.3 551,288 + +0.3 551,293 + -0.5 551,317 + +0.3 551,351 + JDDGAC_03315 0.14 -0.3 551,468 + JDDGAC_03315 0.70 +0.2 551,560 - -0.0 551,590 + -0.5 551,807 + terB JDDGAC_03320 0.20 -0.5 551,818 - terB JDDGAC_03320 0.22 -0.9
Or see this region's nucleotide sequence