Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29165 and cbtA are separated by 88 nucleotides cbtA and yeeT are separated by 73 nucleotides yeeT and yeeS are separated by 62 nucleotides yeeS and JDDGAC_29185 are separated by 14 nucleotides JDDGAC_29185 and JDDGAC_29190 are separated by 81 nucleotides
JDDGAC_29165: JDDGAC_29165 - toxin of the YeeV-YeeU toxin-antitoxin system, at 5,566,309 to 5,566,572
_29165
JDDGAC_29170: cbtA - type IV toxin-antitoxin system toxin CbtA, at 5,566,661 to 5,567,029
cbtA
JDDGAC_29175: yeeT - Uncharacterized protein YeeT, at 5,567,103 to 5,567,324
yeeT
JDDGAC_29180: yeeS - UPF0758 protein YeeS, at 5,567,387 to 5,567,863
yeeS
JDDGAC_29185: JDDGAC_29185 - restriction endonuclease, at 5,567,878 to 5,568,357
_29185
JDDGAC_29190: JDDGAC_29190 - DUF932 domain-containing protein, at 5,568,439 to 5,569,260
_29190
Position (kb) 5567
5568 Strain fitness (log2 ratio) -1
0
1
2 at 5566.472 kb on + strand, within JDDGAC_29165 at 5566.555 kb on + strand at 5566.556 kb on - strand at 5566.561 kb on + strand at 5566.598 kb on + strand at 5566.704 kb on + strand, within cbtA at 5566.852 kb on - strand, within cbtA at 5566.852 kb on - strand, within cbtA at 5566.902 kb on + strand, within cbtA at 5566.902 kb on + strand, within cbtA at 5567.041 kb on + strand at 5567.210 kb on + strand, within yeeT at 5567.240 kb on - strand, within yeeT at 5567.994 kb on - strand, within JDDGAC_29185 at 5567.994 kb on - strand, within JDDGAC_29185 at 5568.112 kb on - strand, within JDDGAC_29185 at 5568.579 kb on + strand, within JDDGAC_29190
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 5,566,472 + JDDGAC_29165 0.62 -0.6 5,566,555 + +0.5 5,566,556 - +0.1 5,566,561 + +1.1 5,566,598 + -0.2 5,566,704 + cbtA JDDGAC_29170 0.12 -0.7 5,566,852 - cbtA JDDGAC_29170 0.52 +1.1 5,566,852 - cbtA JDDGAC_29170 0.52 +1.8 5,566,902 + cbtA JDDGAC_29170 0.65 +0.2 5,566,902 + cbtA JDDGAC_29170 0.65 +0.7 5,567,041 + +0.8 5,567,210 + yeeT JDDGAC_29175 0.48 +0.9 5,567,240 - yeeT JDDGAC_29175 0.62 -0.2 5,567,994 - JDDGAC_29185 0.24 +0.1 5,567,994 - JDDGAC_29185 0.24 +0.2 5,568,112 - JDDGAC_29185 0.49 +0.6 5,568,579 + JDDGAC_29190 0.17 +1.0
Or see this region's nucleotide sequence