Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28455 and fcl are separated by 2 nucleotides fcl and gmm overlap by 1 nucleotides gmm and wcaI overlap by 4 nucleotides
JDDGAC_28455: JDDGAC_28455 - GDP-mannose 4,6-dehydratase, at 5,455,550 to 5,456,671
_28455
JDDGAC_28460: fcl - GDP-L-fucose synthase, at 5,456,674 to 5,457,639
fcl
JDDGAC_28465: gmm - GDP-mannose mannosyl hydrolase, at 5,457,639 to 5,458,121
gmm
JDDGAC_28470: wcaI - colanic acid biosynthesis fucosyltransferase WcaI, at 5,458,118 to 5,459,341
wcaI
Position (kb) 5457
5458
5459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5456.669 kb on + strand at 5456.670 kb on - strand at 5456.673 kb on + strand at 5456.674 kb on - strand at 5456.769 kb on - strand at 5456.852 kb on - strand, within fcl at 5457.045 kb on - strand, within fcl at 5457.045 kb on - strand, within fcl at 5457.122 kb on - strand, within fcl at 5457.403 kb on - strand, within fcl at 5457.599 kb on - strand at 5457.599 kb on - strand at 5457.599 kb on - strand at 5457.650 kb on - strand at 5457.914 kb on + strand, within gmm at 5457.945 kb on + strand, within gmm at 5457.946 kb on - strand, within gmm at 5458.125 kb on + strand at 5458.133 kb on + strand at 5458.146 kb on - strand at 5458.146 kb on - strand at 5458.176 kb on - strand at 5458.245 kb on - strand, within wcaI at 5458.245 kb on - strand, within wcaI at 5458.247 kb on + strand, within wcaI at 5458.334 kb on + strand, within wcaI at 5458.335 kb on - strand, within wcaI at 5458.542 kb on + strand, within wcaI at 5458.621 kb on + strand, within wcaI at 5458.621 kb on + strand, within wcaI at 5458.633 kb on + strand, within wcaI at 5458.676 kb on - strand, within wcaI at 5459.001 kb on - strand, within wcaI
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 5,456,669 + -0.8 5,456,670 - -0.6 5,456,673 + -1.1 5,456,674 - -0.9 5,456,769 - -0.1 5,456,852 - fcl JDDGAC_28460 0.18 +1.0 5,457,045 - fcl JDDGAC_28460 0.38 +0.9 5,457,045 - fcl JDDGAC_28460 0.38 +0.3 5,457,122 - fcl JDDGAC_28460 0.46 +2.1 5,457,403 - fcl JDDGAC_28460 0.75 +0.9 5,457,599 - -1.1 5,457,599 - +0.8 5,457,599 - +1.0 5,457,650 - +0.9 5,457,914 + gmm JDDGAC_28465 0.57 -0.9 5,457,945 + gmm JDDGAC_28465 0.63 -0.3 5,457,946 - gmm JDDGAC_28465 0.64 +0.2 5,458,125 + -0.6 5,458,133 + -1.2 5,458,146 - -0.3 5,458,146 - -0.7 5,458,176 - -2.0 5,458,245 - wcaI JDDGAC_28470 0.10 +0.3 5,458,245 - wcaI JDDGAC_28470 0.10 +0.8 5,458,247 + wcaI JDDGAC_28470 0.11 -0.0 5,458,334 + wcaI JDDGAC_28470 0.18 +0.2 5,458,335 - wcaI JDDGAC_28470 0.18 +0.2 5,458,542 + wcaI JDDGAC_28470 0.35 +1.3 5,458,621 + wcaI JDDGAC_28470 0.41 -0.1 5,458,621 + wcaI JDDGAC_28470 0.41 -2.9 5,458,633 + wcaI JDDGAC_28470 0.42 -0.6 5,458,676 - wcaI JDDGAC_28470 0.46 +0.4 5,459,001 - wcaI JDDGAC_28470 0.72 -0.5
Or see this region's nucleotide sequence