Strain Fitness in Escherichia coli ECRC98 around JDDGAC_19405

Experiment: WM_Bas31

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas31
3,691,165	+	lldD	JDDGAC_19395	0.85	-0.0
3,691,166	-	lldD	JDDGAC_19395	0.85	+0.3
3,691,189	-	lldD	JDDGAC_19395	0.87	-0.2
3,691,242	-				+0.5
3,691,242	-				+0.5
3,691,250	+				-1.7
3,691,250	+				-0.2
3,691,266	+				+0.5
3,691,266	+				+0.6
3,691,266	+				-0.8
3,691,266	+				+0.2
3,691,266	+				-0.3
3,691,267	-				-0.2
3,691,267	-				+0.7
3,691,268	+				+0.2
3,691,268	+				-0.4
3,691,332	+				-0.3
3,691,332	+				+0.0
3,691,364	+				-1.2
3,691,364	+				-0.4
3,691,364	+				-0.9
3,691,365	-				-0.3
3,691,365	-				+1.7
3,691,445	+	lldR	JDDGAC_19400	0.14	-0.3
3,691,446	-	lldR	JDDGAC_19400	0.14	-0.5
3,691,446	-	lldR	JDDGAC_19400	0.14	+0.0
3,691,555	+	lldR	JDDGAC_19400	0.28	+0.0
3,691,556	-	lldR	JDDGAC_19400	0.28	-1.9
3,691,571	+	lldR	JDDGAC_19400	0.30	+0.9
3,691,571	+	lldR	JDDGAC_19400	0.30	-0.6
3,691,572	-	lldR	JDDGAC_19400	0.31	-0.9
3,691,634	+	lldR	JDDGAC_19400	0.38	-0.5
3,691,634	+	lldR	JDDGAC_19400	0.38	+0.4
3,691,634	+	lldR	JDDGAC_19400	0.38	+1.0
3,691,634	+	lldR	JDDGAC_19400	0.38	+0.6
3,691,635	-	lldR	JDDGAC_19400	0.39	-1.0
3,691,635	-	lldR	JDDGAC_19400	0.39	+0.3
3,691,635	-	lldR	JDDGAC_19400	0.39	+0.2
3,691,635	-	lldR	JDDGAC_19400	0.39	+0.5
3,691,704	+	lldR	JDDGAC_19400	0.47	-0.7
3,691,705	-	lldR	JDDGAC_19400	0.48	-0.1
3,691,812	-	lldR	JDDGAC_19400	0.61	+0.7
3,691,976	+	lldR	JDDGAC_19400	0.82	-0.7
3,692,130	-				+0.8
3,692,136	+				+0.1
3,692,136	+				+0.8
3,692,136	+				+0.4
3,692,137	-				-0.6
3,692,167	+				-0.3
3,692,167	+				-0.9
3,692,257	+				-0.0
3,692,257	+				-0.6
3,692,258	-				+0.9
3,692,258	-				-0.0
3,692,300	-	lldP	JDDGAC_19405	0.11	-0.5
3,692,377	+	lldP	JDDGAC_19405	0.16	+0.1
3,692,377	+	lldP	JDDGAC_19405	0.16	+0.1
3,692,506	+	lldP	JDDGAC_19405	0.24	+0.7
3,692,538	+	lldP	JDDGAC_19405	0.26	+0.4
3,692,538	+	lldP	JDDGAC_19405	0.26	-0.5
3,692,538	+	lldP	JDDGAC_19405	0.26	-0.2
3,692,539	-	lldP	JDDGAC_19405	0.26	+0.0
3,692,546	+	lldP	JDDGAC_19405	0.26	-1.4
3,692,674	+	lldP	JDDGAC_19405	0.34	+0.2
3,692,688	+	lldP	JDDGAC_19405	0.35	-0.6
3,692,688	+	lldP	JDDGAC_19405	0.35	+1.5
3,692,772	+	lldP	JDDGAC_19405	0.40	-1.3
3,692,773	-	lldP	JDDGAC_19405	0.40	+0.0
3,692,773	-	lldP	JDDGAC_19405	0.40	-0.4
3,692,803	+	lldP	JDDGAC_19405	0.42	-0.1
3,692,867	+	lldP	JDDGAC_19405	0.46	+0.4
3,692,867	+	lldP	JDDGAC_19405	0.46	-0.3
3,692,868	-	lldP	JDDGAC_19405	0.46	-0.8
3,692,868	-	lldP	JDDGAC_19405	0.46	+1.6
3,692,868	-	lldP	JDDGAC_19405	0.46	-0.0
3,692,908	+	lldP	JDDGAC_19405	0.48	-0.3
3,692,908	+	lldP	JDDGAC_19405	0.48	+0.5
3,692,909	-	lldP	JDDGAC_19405	0.48	+0.2
3,692,909	-	lldP	JDDGAC_19405	0.48	-0.0
3,693,010	+	lldP	JDDGAC_19405	0.54	+0.3
3,693,011	-	lldP	JDDGAC_19405	0.54	+0.2
3,693,011	-	lldP	JDDGAC_19405	0.54	-2.1
3,693,011	-	lldP	JDDGAC_19405	0.54	-0.2
3,693,046	+	lldP	JDDGAC_19405	0.56	+0.1
3,693,046	+	lldP	JDDGAC_19405	0.56	+0.3
3,693,047	-	lldP	JDDGAC_19405	0.57	-0.8
3,693,047	-	lldP	JDDGAC_19405	0.57	+1.0
3,693,047	-	lldP	JDDGAC_19405	0.57	-3.3
3,693,047	-	lldP	JDDGAC_19405	0.57	-0.3
3,693,164	-	lldP	JDDGAC_19405	0.64	-0.6
3,693,164	-	lldP	JDDGAC_19405	0.64	+0.4
3,693,170	+	lldP	JDDGAC_19405	0.64	+0.0
3,693,171	-	lldP	JDDGAC_19405	0.64	+1.3
3,693,218	+	lldP	JDDGAC_19405	0.67	-0.2
3,693,218	+	lldP	JDDGAC_19405	0.67	+0.0
3,693,219	-	lldP	JDDGAC_19405	0.67	+0.1
3,693,219	-	lldP	JDDGAC_19405	0.67	-0.6
3,693,496	-	lldP	JDDGAC_19405	0.84	-2.5
3,693,514	+	lldP	JDDGAC_19405	0.85	-1.8
3,693,514	+	lldP	JDDGAC_19405	0.85	+0.5
3,693,543	+	lldP	JDDGAC_19405	0.86	+0.7
3,693,544	-	lldP	JDDGAC_19405	0.87	-1.0
3,693,593	-	lldP	JDDGAC_19405	0.89	+0.1
3,693,648	+				+0.2
3,693,648	+				+1.0
3,693,667	+				+0.0
3,693,708	-				-2.6
3,693,728	-				-1.5
3,693,728	-				+0.1
3,693,728	-				+0.5
3,693,744	+				+0.1
3,693,902	+				+0.3
3,693,902	+				-0.1
3,693,926	+				+0.6
3,693,927	-				+1.2
3,693,927	-				+0.9
3,693,927	-				-0.7
3,693,957	-				+0.8
3,694,063	-				+1.1
3,694,063	-				+0.4
3,694,063	-				+0.2
3,694,110	+				+0.4
3,694,111	-				+0.5
3,694,119	+				+0.7
3,694,120	-				+0.2
3,694,124	+				+0.2
3,694,124	+				-0.5
3,694,125	-				+0.5
3,694,135	+				+0.4
3,694,136	-				+0.6
3,694,168	+				+0.3
3,694,169	-				+0.2
3,694,187	+				-0.3
3,694,187	+				+0.3
3,694,188	-				-0.2
3,694,188	-				-0.8
3,694,190	+				-0.6
3,694,190	+				+0.7
3,694,190	+				+0.3
3,694,191	-				-1.2
3,694,191	-				-1.4
3,694,191	-				-0.6
3,694,191	-				-0.2
3,694,191	-				+0.1
3,694,191	-				-0.1
3,694,197	+				-0.2
3,694,198	-				-0.3
3,694,237	-				-0.3
3,694,237	-				+0.4
3,694,237	-				-0.4
3,694,267	+				+0.4
3,694,267	+				+0.6
3,694,268	-				-0.2
3,694,268	-				+0.3
3,694,268	-				-1.3
3,694,268	-				-0.1
3,694,268	-				-0.4
3,694,268	-				-0.9
3,694,268	-				-0.9
3,694,268	-				+0.3
3,694,271	+				-0.2
3,694,284	-				+0.4
3,694,310	-				-0.4
3,694,310	-				-0.2
3,694,377	-				+0.7
3,694,417	+				-0.3
3,694,417	+				-0.5
3,694,538	+				+0.2
3,694,544	+				+0.6
3,694,544	+				-0.8
3,694,544	+				-0.6
3,694,545	-				+0.6
3,694,545	-				+0.1
3,694,545	-				-0.5
3,694,545	-				+0.6
3,694,545	-				-0.9
3,694,546	+				-0.7
3,694,547	-				-2.9
3,694,581	+				+0.4
3,694,582	-				-2.3
3,694,582	-				+0.7
3,694,620	-	ehaG	JDDGAC_19410	0.10	+0.5
3,694,620	-	ehaG	JDDGAC_19410	0.10	-0.4
3,694,650	+	ehaG	JDDGAC_19410	0.11	+0.0
3,694,651	-	ehaG	JDDGAC_19410	0.11	+0.4
3,694,676	+	ehaG	JDDGAC_19410	0.11	-0.0
3,694,677	-	ehaG	JDDGAC_19410	0.11	+0.6
3,694,687	-	ehaG	JDDGAC_19410	0.12	-0.1
3,694,698	-	ehaG	JDDGAC_19410	0.12	+0.2
3,694,724	+	ehaG	JDDGAC_19410	0.12	-0.9