Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16030

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_16015 and JDDGAC_16020 are separated by 110 nucleotidesJDDGAC_16020 and JDDGAC_16025 are separated by 51 nucleotidesJDDGAC_16025 and epmB are separated by 41 nucleotidesepmB and yjeJ are separated by 234 nucleotides JDDGAC_16015: JDDGAC_16015 - Entericidin B, at 3,014,892 to 3,015,038 _16015 JDDGAC_16020: JDDGAC_16020 - Entericidin A, at 3,015,149 to 3,015,274 _16020 JDDGAC_16025: JDDGAC_16025 - Elongation factor P, at 3,015,326 to 3,015,892 _16025 JDDGAC_16030: epmB - EF-P beta-lysylation protein EpmB, at 3,015,934 to 3,016,962 epmB JDDGAC_16035: yjeJ - Uncharacterized protein YjeJ, at 3,017,197 to 3,018,066 yjeJ Position (kb) 3015 3016 3017Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3014.982 kb on + strand, within JDDGAC_16015at 3014.982 kb on + strand, within JDDGAC_16015at 3014.982 kb on + strand, within JDDGAC_16015at 3014.983 kb on - strand, within JDDGAC_16015at 3014.983 kb on - strand, within JDDGAC_16015at 3014.985 kb on + strand, within JDDGAC_16015at 3014.985 kb on + strand, within JDDGAC_16015at 3014.986 kb on - strand, within JDDGAC_16015at 3014.986 kb on - strand, within JDDGAC_16015at 3015.039 kb on - strandat 3015.052 kb on + strandat 3015.062 kb on + strandat 3015.062 kb on + strandat 3015.063 kb on - strandat 3015.067 kb on - strandat 3015.067 kb on - strandat 3015.067 kb on - strandat 3015.067 kb on - strandat 3015.076 kb on + strandat 3015.086 kb on + strandat 3015.288 kb on - strandat 3015.327 kb on + strandat 3015.328 kb on - strandat 3015.953 kb on + strandat 3016.961 kb on - strandat 3016.969 kb on - strandat 3017.020 kb on - strandat 3017.020 kb on - strandat 3017.043 kb on - strandat 3017.103 kb on - strandat 3017.120 kb on - strandat 3017.194 kb on + strandat 3017.244 kb on + strandat 3017.307 kb on + strand, within yjeJat 3017.307 kb on + strand, within yjeJat 3017.370 kb on + strand, within yjeJat 3017.399 kb on - strand, within yjeJat 3017.415 kb on + strand, within yjeJat 3017.512 kb on - strand, within yjeJat 3017.552 kb on + strand, within yjeJat 3017.665 kb on - strand, within yjeJat 3017.693 kb on + strand, within yjeJat 3017.695 kb on + strand, within yjeJat 3017.695 kb on + strand, within yjeJat 3017.740 kb on + strand, within yjeJat 3017.780 kb on - strand, within yjeJat 3017.950 kb on + strand, within yjeJat 3017.950 kb on + strand, within yjeJ

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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3,014,982 + JDDGAC_16015 0.61 -1.6
3,014,982 + JDDGAC_16015 0.61 -0.2
3,014,982 + JDDGAC_16015 0.61 -0.1
3,014,983 - JDDGAC_16015 0.62 +0.1
3,014,983 - JDDGAC_16015 0.62 +0.0
3,014,985 + JDDGAC_16015 0.63 +0.2
3,014,985 + JDDGAC_16015 0.63 -0.1
3,014,986 - JDDGAC_16015 0.64 +0.0
3,014,986 - JDDGAC_16015 0.64 +1.6
3,015,039 - -1.3
3,015,052 + +0.6
3,015,062 + +1.1
3,015,062 + -0.3
3,015,063 - +1.7
3,015,067 - -0.2
3,015,067 - -1.2
3,015,067 - +0.1
3,015,067 - -0.3
3,015,076 + +0.6
3,015,086 + +0.6
3,015,288 - +0.6
3,015,327 + -0.3
3,015,328 - +0.9
3,015,953 + -0.0
3,016,961 - +0.1
3,016,969 - -0.6
3,017,020 - +0.1
3,017,020 - +0.2
3,017,043 - -1.6
3,017,103 - +1.8
3,017,120 - +0.8
3,017,194 + -0.6
3,017,244 + +0.2
3,017,307 + yjeJ JDDGAC_16035 0.13 +0.3
3,017,307 + yjeJ JDDGAC_16035 0.13 +0.8
3,017,370 + yjeJ JDDGAC_16035 0.20 -0.1
3,017,399 - yjeJ JDDGAC_16035 0.23 -3.1
3,017,415 + yjeJ JDDGAC_16035 0.25 +0.6
3,017,512 - yjeJ JDDGAC_16035 0.36 -0.6
3,017,552 + yjeJ JDDGAC_16035 0.41 -0.3
3,017,665 - yjeJ JDDGAC_16035 0.54 +1.2
3,017,693 + yjeJ JDDGAC_16035 0.57 +0.1
3,017,695 + yjeJ JDDGAC_16035 0.57 -0.4
3,017,695 + yjeJ JDDGAC_16035 0.57 -2.7
3,017,740 + yjeJ JDDGAC_16035 0.62 +1.2
3,017,780 - yjeJ JDDGAC_16035 0.67 -1.6
3,017,950 + yjeJ JDDGAC_16035 0.87 -1.5
3,017,950 + yjeJ JDDGAC_16035 0.87 -0.8

Or see this region's nucleotide sequence