Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_16015 and JDDGAC_16020 are separated by 110 nucleotides JDDGAC_16020 and JDDGAC_16025 are separated by 51 nucleotides JDDGAC_16025 and epmB are separated by 41 nucleotides epmB and yjeJ are separated by 234 nucleotides
JDDGAC_16015: JDDGAC_16015 - Entericidin B, at 3,014,892 to 3,015,038
_16015
JDDGAC_16020: JDDGAC_16020 - Entericidin A, at 3,015,149 to 3,015,274
_16020
JDDGAC_16025: JDDGAC_16025 - Elongation factor P, at 3,015,326 to 3,015,892
_16025
JDDGAC_16030: epmB - EF-P beta-lysylation protein EpmB, at 3,015,934 to 3,016,962
epmB
JDDGAC_16035: yjeJ - Uncharacterized protein YjeJ, at 3,017,197 to 3,018,066
yjeJ
Position (kb)
3015
3016
3017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3014.982 kb on + strand, within JDDGAC_16015 at 3014.982 kb on + strand, within JDDGAC_16015 at 3014.982 kb on + strand, within JDDGAC_16015 at 3014.983 kb on - strand, within JDDGAC_16015 at 3014.983 kb on - strand, within JDDGAC_16015 at 3014.985 kb on + strand, within JDDGAC_16015 at 3014.985 kb on + strand, within JDDGAC_16015 at 3014.986 kb on - strand, within JDDGAC_16015 at 3014.986 kb on - strand, within JDDGAC_16015 at 3015.039 kb on - strand at 3015.052 kb on + strand at 3015.062 kb on + strand at 3015.062 kb on + strand at 3015.063 kb on - strand at 3015.067 kb on - strand at 3015.067 kb on - strand at 3015.067 kb on - strand at 3015.067 kb on - strand at 3015.076 kb on + strand at 3015.086 kb on + strand at 3015.288 kb on - strand at 3015.327 kb on + strand at 3015.328 kb on - strand at 3015.953 kb on + strand at 3016.961 kb on - strand at 3016.969 kb on - strand at 3017.020 kb on - strand at 3017.020 kb on - strand at 3017.043 kb on - strand at 3017.103 kb on - strand at 3017.120 kb on - strand at 3017.194 kb on + strand at 3017.244 kb on + strand at 3017.307 kb on + strand, within yjeJ at 3017.307 kb on + strand, within yjeJ at 3017.370 kb on + strand, within yjeJ at 3017.399 kb on - strand, within yjeJ at 3017.415 kb on + strand, within yjeJ at 3017.512 kb on - strand, within yjeJ at 3017.552 kb on + strand, within yjeJ at 3017.665 kb on - strand, within yjeJ at 3017.693 kb on + strand, within yjeJ at 3017.695 kb on + strand, within yjeJ at 3017.695 kb on + strand, within yjeJ at 3017.740 kb on + strand, within yjeJ at 3017.780 kb on - strand, within yjeJ at 3017.950 kb on + strand, within yjeJ at 3017.950 kb on + strand, within yjeJ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 3,014,982 + JDDGAC_16015 0.61 -1.6 3,014,982 + JDDGAC_16015 0.61 -0.2 3,014,982 + JDDGAC_16015 0.61 -0.1 3,014,983 - JDDGAC_16015 0.62 +0.1 3,014,983 - JDDGAC_16015 0.62 +0.0 3,014,985 + JDDGAC_16015 0.63 +0.2 3,014,985 + JDDGAC_16015 0.63 -0.1 3,014,986 - JDDGAC_16015 0.64 +0.0 3,014,986 - JDDGAC_16015 0.64 +1.6 3,015,039 - -1.3 3,015,052 + +0.6 3,015,062 + +1.1 3,015,062 + -0.3 3,015,063 - +1.7 3,015,067 - -0.2 3,015,067 - -1.2 3,015,067 - +0.1 3,015,067 - -0.3 3,015,076 + +0.6 3,015,086 + +0.6 3,015,288 - +0.6 3,015,327 + -0.3 3,015,328 - +0.9 3,015,953 + -0.0 3,016,961 - +0.1 3,016,969 - -0.6 3,017,020 - +0.1 3,017,020 - +0.2 3,017,043 - -1.6 3,017,103 - +1.8 3,017,120 - +0.8 3,017,194 + -0.6 3,017,244 + +0.2 3,017,307 + yjeJ JDDGAC_16035 0.13 +0.3 3,017,307 + yjeJ JDDGAC_16035 0.13 +0.8 3,017,370 + yjeJ JDDGAC_16035 0.20 -0.1 3,017,399 - yjeJ JDDGAC_16035 0.23 -3.1 3,017,415 + yjeJ JDDGAC_16035 0.25 +0.6 3,017,512 - yjeJ JDDGAC_16035 0.36 -0.6 3,017,552 + yjeJ JDDGAC_16035 0.41 -0.3 3,017,665 - yjeJ JDDGAC_16035 0.54 +1.2 3,017,693 + yjeJ JDDGAC_16035 0.57 +0.1 3,017,695 + yjeJ JDDGAC_16035 0.57 -0.4 3,017,695 + yjeJ JDDGAC_16035 0.57 -2.7 3,017,740 + yjeJ JDDGAC_16035 0.62 +1.2 3,017,780 - yjeJ JDDGAC_16035 0.67 -1.6 3,017,950 + yjeJ JDDGAC_16035 0.87 -1.5 3,017,950 + yjeJ JDDGAC_16035 0.87 -0.8
Or see this region's nucleotide sequence