Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14265

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsI and JDDGAC_14265 are separated by 15 nucleotidesJDDGAC_14265 and rsmH overlap by 4 nucleotidesrsmH and mraZ are separated by 1 nucleotides JDDGAC_14260: ftsI - peptidoglycan glycosyltransferase FtsI, at 2,648,205 to 2,649,971 ftsI JDDGAC_14265: JDDGAC_14265 - penicillin-binding protein PBP3 FtsI, at 2,649,987 to 2,650,352 _14265 JDDGAC_14270: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,650,349 to 2,651,290 rsmH JDDGAC_14275: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 2,651,292 to 2,651,750 mraZ Position (kb) 2649 2650 2651Strain fitness (log2 ratio) -2 -1 0 1at 2650.635 kb on - strand, within rsmHat 2650.635 kb on - strand, within rsmHat 2650.635 kb on - strand, within rsmH

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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2,650,635 - rsmH JDDGAC_14270 0.30 +0.1
2,650,635 - rsmH JDDGAC_14270 0.30 -1.9
2,650,635 - rsmH JDDGAC_14270 0.30 +0.7

Or see this region's nucleotide sequence