Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnD and dapD are separated by 30 nucleotides dapD and yaeH are separated by 314 nucleotides yaeH and cdaR are separated by 88 nucleotides
JDDGAC_13830: glnD - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 2,553,847 to 2,556,519
glnD
JDDGAC_13835: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,556,550 to 2,557,374
dapD
JDDGAC_13840: yaeH - DUF3461 domain-containing protein, at 2,557,689 to 2,558,075
yaeH
JDDGAC_13845: cdaR - DNA-binding transcriptional regulator CdaR, at 2,558,164 to 2,559,321
cdaR
Position (kb)
2556
2557
2558 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2556.526 kb on + strand at 2556.526 kb on + strand at 2556.532 kb on + strand at 2556.533 kb on - strand at 2557.362 kb on + strand at 2557.379 kb on - strand at 2557.426 kb on + strand at 2557.426 kb on + strand at 2557.437 kb on - strand at 2557.462 kb on - strand at 2557.495 kb on + strand at 2557.551 kb on - strand at 2557.551 kb on - strand at 2557.585 kb on - strand at 2557.585 kb on - strand at 2557.654 kb on - strand at 2557.665 kb on - strand at 2557.692 kb on + strand at 2557.719 kb on - strand at 2557.832 kb on + strand, within yaeH at 2557.850 kb on + strand, within yaeH at 2557.886 kb on + strand, within yaeH at 2557.920 kb on + strand, within yaeH at 2557.923 kb on - strand, within yaeH at 2557.983 kb on - strand, within yaeH at 2557.983 kb on - strand, within yaeH at 2557.999 kb on + strand, within yaeH at 2557.999 kb on + strand, within yaeH at 2557.999 kb on + strand, within yaeH at 2557.999 kb on + strand, within yaeH at 2558.000 kb on - strand, within yaeH at 2558.069 kb on + strand at 2558.073 kb on + strand at 2558.073 kb on + strand at 2558.074 kb on - strand at 2558.074 kb on - strand at 2558.074 kb on - strand at 2558.195 kb on + strand at 2558.195 kb on + strand at 2558.196 kb on - strand at 2558.250 kb on + strand at 2558.250 kb on + strand at 2558.251 kb on - strand at 2558.251 kb on - strand at 2558.265 kb on - strand at 2558.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 2,556,526 + -0.2 2,556,526 + -0.1 2,556,532 + +0.3 2,556,533 - -0.9 2,557,362 + +0.6 2,557,379 - -0.3 2,557,426 + -0.1 2,557,426 + +0.1 2,557,437 - -0.6 2,557,462 - +0.0 2,557,495 + +1.9 2,557,551 - -0.9 2,557,551 - -2.3 2,557,585 - -0.8 2,557,585 - -0.7 2,557,654 - +0.3 2,557,665 - +0.4 2,557,692 + -0.0 2,557,719 - +0.1 2,557,832 + yaeH JDDGAC_13840 0.37 -1.0 2,557,850 + yaeH JDDGAC_13840 0.42 +0.7 2,557,886 + yaeH JDDGAC_13840 0.51 -0.5 2,557,920 + yaeH JDDGAC_13840 0.60 +0.6 2,557,923 - yaeH JDDGAC_13840 0.60 -0.3 2,557,983 - yaeH JDDGAC_13840 0.76 +1.2 2,557,983 - yaeH JDDGAC_13840 0.76 +0.7 2,557,999 + yaeH JDDGAC_13840 0.80 -0.2 2,557,999 + yaeH JDDGAC_13840 0.80 +1.2 2,557,999 + yaeH JDDGAC_13840 0.80 -0.8 2,557,999 + yaeH JDDGAC_13840 0.80 -0.2 2,558,000 - yaeH JDDGAC_13840 0.80 -0.4 2,558,069 + +0.6 2,558,073 + +0.5 2,558,073 + -0.5 2,558,074 - +0.2 2,558,074 - +0.6 2,558,074 - +0.5 2,558,195 + +0.7 2,558,195 + +0.6 2,558,196 - +0.4 2,558,250 + -0.8 2,558,250 + +0.2 2,558,251 - -0.1 2,558,251 - +0.3 2,558,265 - -0.3 2,558,277 + -0.3
Or see this region's nucleotide sequence