Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07605

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07595 and JDDGAC_07600 overlap by 4 nucleotidesJDDGAC_07600 and JDDGAC_07605 overlap by 4 nucleotidesJDDGAC_07605 and cah are separated by 110 nucleotides JDDGAC_07595: JDDGAC_07595 - phospholipase, at 1,313,458 to 1,314,528 _07595 JDDGAC_07600: JDDGAC_07600 - chemotaxis protein, at 1,314,525 to 1,315,430 _07600 JDDGAC_07605: JDDGAC_07605 - dGTPase, at 1,315,427 to 1,317,811 _07605 JDDGAC_07610: cah - calcium-binding autotransporter Cah, at 1,317,922 to 1,320,771 cah Position (kb) 1315 1316 1317 1318Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1315.702 kb on + strand, within JDDGAC_07605at 1315.702 kb on + strand, within JDDGAC_07605at 1316.302 kb on - strand, within JDDGAC_07605at 1316.450 kb on - strand, within JDDGAC_07605at 1316.452 kb on + strand, within JDDGAC_07605at 1316.452 kb on + strand, within JDDGAC_07605at 1316.453 kb on - strand, within JDDGAC_07605at 1316.462 kb on + strand, within JDDGAC_07605at 1316.499 kb on - strand, within JDDGAC_07605at 1316.499 kb on - strand, within JDDGAC_07605at 1316.499 kb on - strand, within JDDGAC_07605at 1316.499 kb on - strand, within JDDGAC_07605at 1316.594 kb on + strand, within JDDGAC_07605at 1316.594 kb on + strand, within JDDGAC_07605at 1316.630 kb on - strand, within JDDGAC_07605at 1316.654 kb on - strand, within JDDGAC_07605at 1316.662 kb on + strand, within JDDGAC_07605at 1316.663 kb on - strand, within JDDGAC_07605at 1316.663 kb on - strand, within JDDGAC_07605at 1316.663 kb on - strand, within JDDGAC_07605at 1316.663 kb on - strand, within JDDGAC_07605at 1316.695 kb on + strand, within JDDGAC_07605at 1316.696 kb on - strand, within JDDGAC_07605at 1316.696 kb on - strand, within JDDGAC_07605at 1316.794 kb on - strand, within JDDGAC_07605at 1316.966 kb on - strand, within JDDGAC_07605at 1316.975 kb on - strand, within JDDGAC_07605at 1317.012 kb on + strand, within JDDGAC_07605at 1317.012 kb on + strand, within JDDGAC_07605at 1317.012 kb on + strand, within JDDGAC_07605at 1317.047 kb on + strand, within JDDGAC_07605at 1317.254 kb on + strand, within JDDGAC_07605at 1317.255 kb on - strand, within JDDGAC_07605at 1317.304 kb on + strand, within JDDGAC_07605at 1317.335 kb on + strand, within JDDGAC_07605at 1317.701 kb on - strandat 1317.701 kb on - strandat 1317.711 kb on - strandat 1317.824 kb on + strandat 1317.824 kb on + strandat 1317.833 kb on + strandat 1317.918 kb on - strandat 1317.918 kb on - strandat 1318.370 kb on + strand, within cahat 1318.370 kb on + strand, within cahat 1318.407 kb on + strand, within cahat 1318.546 kb on + strand, within cahat 1318.652 kb on + strand, within cahat 1318.652 kb on + strand, within cahat 1318.652 kb on + strand, within cahat 1318.653 kb on - strand, within cahat 1318.653 kb on - strand, within cahat 1318.653 kb on - strand, within cahat 1318.653 kb on - strand, within cahat 1318.674 kb on + strand, within cahat 1318.675 kb on - strand, within cah

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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1,315,702 + JDDGAC_07605 0.12 -0.2
1,315,702 + JDDGAC_07605 0.12 +1.9
1,316,302 - JDDGAC_07605 0.37 -2.1
1,316,450 - JDDGAC_07605 0.43 +0.1
1,316,452 + JDDGAC_07605 0.43 -0.5
1,316,452 + JDDGAC_07605 0.43 +0.4
1,316,453 - JDDGAC_07605 0.43 +0.1
1,316,462 + JDDGAC_07605 0.43 -0.4
1,316,499 - JDDGAC_07605 0.45 +0.1
1,316,499 - JDDGAC_07605 0.45 -0.0
1,316,499 - JDDGAC_07605 0.45 -0.3
1,316,499 - JDDGAC_07605 0.45 +1.5
1,316,594 + JDDGAC_07605 0.49 +1.6
1,316,594 + JDDGAC_07605 0.49 -0.1
1,316,630 - JDDGAC_07605 0.50 -0.2
1,316,654 - JDDGAC_07605 0.51 +0.2
1,316,662 + JDDGAC_07605 0.52 -0.9
1,316,663 - JDDGAC_07605 0.52 +0.7
1,316,663 - JDDGAC_07605 0.52 -0.6
1,316,663 - JDDGAC_07605 0.52 +0.3
1,316,663 - JDDGAC_07605 0.52 -3.3
1,316,695 + JDDGAC_07605 0.53 -0.4
1,316,696 - JDDGAC_07605 0.53 -0.6
1,316,696 - JDDGAC_07605 0.53 +0.4
1,316,794 - JDDGAC_07605 0.57 -0.4
1,316,966 - JDDGAC_07605 0.65 +0.8
1,316,975 - JDDGAC_07605 0.65 +0.1
1,317,012 + JDDGAC_07605 0.66 +1.0
1,317,012 + JDDGAC_07605 0.66 -1.3
1,317,012 + JDDGAC_07605 0.66 -1.2
1,317,047 + JDDGAC_07605 0.68 -0.3
1,317,254 + JDDGAC_07605 0.77 +0.5
1,317,255 - JDDGAC_07605 0.77 -0.0
1,317,304 + JDDGAC_07605 0.79 -0.1
1,317,335 + JDDGAC_07605 0.80 +0.7
1,317,701 - +0.5
1,317,701 - -0.3
1,317,711 - -1.9
1,317,824 + -0.1
1,317,824 + +1.6
1,317,833 + -0.6
1,317,918 - +0.8
1,317,918 - -0.8
1,318,370 + cah JDDGAC_07610 0.16 +0.1
1,318,370 + cah JDDGAC_07610 0.16 -2.3
1,318,407 + cah JDDGAC_07610 0.17 +0.3
1,318,546 + cah JDDGAC_07610 0.22 +0.2
1,318,652 + cah JDDGAC_07610 0.26 +1.0
1,318,652 + cah JDDGAC_07610 0.26 -0.6
1,318,652 + cah JDDGAC_07610 0.26 -1.5
1,318,653 - cah JDDGAC_07610 0.26 -0.3
1,318,653 - cah JDDGAC_07610 0.26 -0.8
1,318,653 - cah JDDGAC_07610 0.26 -0.1
1,318,653 - cah JDDGAC_07610 0.26 -0.6
1,318,674 + cah JDDGAC_07610 0.26 +0.2
1,318,675 - cah JDDGAC_07610 0.26 -0.0

Or see this region's nucleotide sequence