Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03635

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglsB and yneG overlap by 1 nucleotidesyneG and gGDEF are separated by 138 nucleotidesgGDEF and uxaB are separated by 226 nucleotides JDDGAC_03625: glsB - glutaminase B, at 602,863 to 603,789 glsB JDDGAC_03630: yneG - Uncharacterized protein YneG, at 603,789 to 604,148 yneG JDDGAC_03635: gGDEF - diguanylate cyclase, at 604,287 to 605,705 gGDEF JDDGAC_03640: uxaB - tagaturonate reductase, at 605,932 to 607,383 uxaB Position (kb) 604 605 606Strain fitness (log2 ratio) -2 -1 0 1 2at 603.516 kb on + strand, within glsBat 603.588 kb on + strand, within glsBat 603.787 kb on + strandat 604.043 kb on + strand, within yneGat 604.170 kb on + strandat 604.190 kb on + strandat 604.191 kb on - strandat 604.219 kb on - strandat 604.243 kb on - strandat 604.271 kb on + strandat 604.286 kb on - strandat 604.295 kb on - strandat 604.346 kb on + strandat 604.399 kb on + strandat 604.479 kb on - strand, within gGDEFat 604.580 kb on + strand, within gGDEFat 604.663 kb on + strand, within gGDEFat 604.673 kb on + strand, within gGDEFat 604.886 kb on + strand, within gGDEFat 604.954 kb on + strand, within gGDEFat 604.976 kb on + strand, within gGDEFat 605.055 kb on - strand, within gGDEFat 605.331 kb on + strand, within gGDEFat 605.331 kb on + strand, within gGDEFat 605.331 kb on + strand, within gGDEFat 605.331 kb on + strand, within gGDEFat 605.773 kb on + strandat 605.786 kb on - strandat 605.982 kb on + strandat 606.137 kb on - strand, within uxaBat 606.226 kb on + strand, within uxaBat 606.664 kb on + strand, within uxaBat 606.665 kb on - strand, within uxaB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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603,516 + glsB JDDGAC_03625 0.70 +1.6
603,588 + glsB JDDGAC_03625 0.78 +1.6
603,787 + -1.7
604,043 + yneG JDDGAC_03630 0.71 -0.5
604,170 + +0.1
604,190 + -0.1
604,191 - -1.9
604,219 - +0.3
604,243 - -0.3
604,271 + -2.4
604,286 - -1.3
604,295 - -2.1
604,346 + -1.2
604,399 + +0.4
604,479 - gGDEF JDDGAC_03635 0.14 -0.7
604,580 + gGDEF JDDGAC_03635 0.21 -0.5
604,663 + gGDEF JDDGAC_03635 0.26 +1.1
604,673 + gGDEF JDDGAC_03635 0.27 +0.6
604,886 + gGDEF JDDGAC_03635 0.42 +2.2
604,954 + gGDEF JDDGAC_03635 0.47 +1.4
604,976 + gGDEF JDDGAC_03635 0.49 -1.0
605,055 - gGDEF JDDGAC_03635 0.54 -1.0
605,331 + gGDEF JDDGAC_03635 0.74 -0.6
605,331 + gGDEF JDDGAC_03635 0.74 +1.0
605,331 + gGDEF JDDGAC_03635 0.74 +0.4
605,331 + gGDEF JDDGAC_03635 0.74 -0.7
605,773 + +0.2
605,786 - +0.6
605,982 + -1.0
606,137 - uxaB JDDGAC_03640 0.14 -1.4
606,226 + uxaB JDDGAC_03640 0.20 +0.0
606,664 + uxaB JDDGAC_03640 0.50 +0.3
606,665 - uxaB JDDGAC_03640 0.50 -0.9

Or see this region's nucleotide sequence