Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03630

Experiment: WM_Bas31

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsad and glsB are separated by 63 nucleotidesglsB and yneG overlap by 1 nucleotidesyneG and gGDEF are separated by 138 nucleotides JDDGAC_03620: sad - succinate-semialdehyde dehydrogenase, at 601,411 to 602,799 sad JDDGAC_03625: glsB - glutaminase B, at 602,863 to 603,789 glsB JDDGAC_03630: yneG - Uncharacterized protein YneG, at 603,789 to 604,148 yneG JDDGAC_03635: gGDEF - diguanylate cyclase, at 604,287 to 605,705 gGDEF Position (kb) 603 604 605Strain fitness (log2 ratio) -2 -1 0 1 2at 603.210 kb on + strand, within glsBat 603.210 kb on + strand, within glsBat 603.237 kb on + strand, within glsBat 603.273 kb on + strand, within glsBat 603.273 kb on + strand, within glsBat 603.273 kb on + strand, within glsBat 603.516 kb on + strand, within glsBat 603.588 kb on + strand, within glsBat 603.787 kb on + strandat 604.043 kb on + strand, within yneGat 604.170 kb on + strandat 604.190 kb on + strandat 604.191 kb on - strandat 604.219 kb on - strandat 604.243 kb on - strandat 604.271 kb on + strandat 604.286 kb on - strandat 604.295 kb on - strandat 604.346 kb on + strandat 604.399 kb on + strandat 604.479 kb on - strand, within gGDEFat 604.580 kb on + strand, within gGDEFat 604.663 kb on + strand, within gGDEFat 604.673 kb on + strand, within gGDEFat 604.886 kb on + strand, within gGDEFat 604.954 kb on + strand, within gGDEFat 604.976 kb on + strand, within gGDEFat 605.055 kb on - strand, within gGDEF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
remove
603,210 + glsB JDDGAC_03625 0.37 -1.0
603,210 + glsB JDDGAC_03625 0.37 +1.0
603,237 + glsB JDDGAC_03625 0.40 +0.6
603,273 + glsB JDDGAC_03625 0.44 -0.1
603,273 + glsB JDDGAC_03625 0.44 +0.2
603,273 + glsB JDDGAC_03625 0.44 +0.6
603,516 + glsB JDDGAC_03625 0.70 +1.6
603,588 + glsB JDDGAC_03625 0.78 +1.6
603,787 + -1.7
604,043 + yneG JDDGAC_03630 0.71 -0.5
604,170 + +0.1
604,190 + -0.1
604,191 - -1.9
604,219 - +0.3
604,243 - -0.3
604,271 + -2.4
604,286 - -1.3
604,295 - -2.1
604,346 + -1.2
604,399 + +0.4
604,479 - gGDEF JDDGAC_03635 0.14 -0.7
604,580 + gGDEF JDDGAC_03635 0.21 -0.5
604,663 + gGDEF JDDGAC_03635 0.26 +1.1
604,673 + gGDEF JDDGAC_03635 0.27 +0.6
604,886 + gGDEF JDDGAC_03635 0.42 +2.2
604,954 + gGDEF JDDGAC_03635 0.47 +1.4
604,976 + gGDEF JDDGAC_03635 0.49 -1.0
605,055 - gGDEF JDDGAC_03635 0.54 -1.0

Or see this region's nucleotide sequence