Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01485

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntastC and astA overlap by 4 nucleotidesastA and astD overlap by 4 nucleotides JDDGAC_01480: astC - succinylornithine/acetylornithine transaminase, at 257,745 to 258,965 astC JDDGAC_01485: astA - arginine N-succinyltransferase, at 258,962 to 259,996 astA JDDGAC_01490: astD - succinylglutamate-semialdehyde dehydrogenase, at 259,993 to 261,471 astD Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1at 258.050 kb on + strand, within astCat 258.125 kb on + strand, within astCat 258.252 kb on + strand, within astCat 258.255 kb on - strand, within astCat 258.261 kb on - strand, within astCat 258.263 kb on + strand, within astCat 258.264 kb on - strand, within astCat 258.264 kb on - strand, within astCat 258.418 kb on + strand, within astCat 258.451 kb on - strand, within astCat 258.451 kb on - strand, within astCat 258.456 kb on + strand, within astCat 258.456 kb on + strand, within astCat 258.456 kb on + strand, within astCat 258.457 kb on - strand, within astCat 258.457 kb on - strand, within astCat 258.458 kb on + strand, within astCat 258.459 kb on - strand, within astCat 258.488 kb on - strand, within astCat 258.588 kb on + strand, within astCat 258.702 kb on - strand, within astCat 258.748 kb on + strand, within astCat 259.133 kb on + strand, within astAat 259.133 kb on + strand, within astAat 259.134 kb on - strand, within astAat 259.226 kb on + strand, within astAat 259.226 kb on + strand, within astAat 259.227 kb on - strand, within astAat 259.271 kb on + strand, within astAat 259.396 kb on + strand, within astAat 259.598 kb on + strand, within astAat 259.598 kb on + strand, within astAat 259.598 kb on + strand, within astAat 259.706 kb on + strand, within astAat 259.706 kb on + strand, within astAat 259.706 kb on + strand, within astAat 260.052 kb on + strandat 260.052 kb on + strandat 260.319 kb on + strand, within astDat 260.455 kb on - strand, within astDat 260.455 kb on - strand, within astDat 260.488 kb on - strand, within astDat 260.488 kb on - strand, within astDat 260.540 kb on + strand, within astD

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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258,050 + astC JDDGAC_01480 0.25 -0.3
258,125 + astC JDDGAC_01480 0.31 +0.1
258,252 + astC JDDGAC_01480 0.42 +0.1
258,255 - astC JDDGAC_01480 0.42 -1.3
258,261 - astC JDDGAC_01480 0.42 -0.1
258,263 + astC JDDGAC_01480 0.42 -0.2
258,264 - astC JDDGAC_01480 0.43 -3.6
258,264 - astC JDDGAC_01480 0.43 +1.0
258,418 + astC JDDGAC_01480 0.55 +0.5
258,451 - astC JDDGAC_01480 0.58 -0.3
258,451 - astC JDDGAC_01480 0.58 +0.3
258,456 + astC JDDGAC_01480 0.58 -1.1
258,456 + astC JDDGAC_01480 0.58 +0.0
258,456 + astC JDDGAC_01480 0.58 +0.4
258,457 - astC JDDGAC_01480 0.58 +0.2
258,457 - astC JDDGAC_01480 0.58 +0.1
258,458 + astC JDDGAC_01480 0.58 -0.8
258,459 - astC JDDGAC_01480 0.58 -0.1
258,488 - astC JDDGAC_01480 0.61 +0.1
258,588 + astC JDDGAC_01480 0.69 +0.1
258,702 - astC JDDGAC_01480 0.78 +0.7
258,748 + astC JDDGAC_01480 0.82 -0.2
259,133 + astA JDDGAC_01485 0.17 -2.9
259,133 + astA JDDGAC_01485 0.17 +1.0
259,134 - astA JDDGAC_01485 0.17 +0.4
259,226 + astA JDDGAC_01485 0.26 +0.5
259,226 + astA JDDGAC_01485 0.26 -1.0
259,227 - astA JDDGAC_01485 0.26 +0.1
259,271 + astA JDDGAC_01485 0.30 -1.6
259,396 + astA JDDGAC_01485 0.42 +0.7
259,598 + astA JDDGAC_01485 0.61 +0.7
259,598 + astA JDDGAC_01485 0.61 +1.6
259,598 + astA JDDGAC_01485 0.61 +0.9
259,706 + astA JDDGAC_01485 0.72 -0.3
259,706 + astA JDDGAC_01485 0.72 +0.4
259,706 + astA JDDGAC_01485 0.72 -0.6
260,052 + -0.2
260,052 + +0.6
260,319 + astD JDDGAC_01490 0.22 -0.1
260,455 - astD JDDGAC_01490 0.31 +0.5
260,455 - astD JDDGAC_01490 0.31 -0.3
260,488 - astD JDDGAC_01490 0.33 -0.2
260,488 - astD JDDGAC_01490 0.33 +0.1
260,540 + astD JDDGAC_01490 0.37 -0.7

Or see this region's nucleotide sequence