Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dAP2 and finO are separated by 102 nucleotides finO and JDDGAC_30155 are separated by 136 nucleotides JDDGAC_30155 and yncB are separated by 201 nucleotides yncB and JDDGAC_30170 are separated by 45 nucleotides JDDGAC_30170 and JDDGAC_30175 are separated by 37 nucleotides
JDDGAC_30145: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 55,250 to 56,110
dAP2
JDDGAC_30150: finO - Fertility inhibition protein, at 56,213 to 56,773
finO
JDDGAC_30155: JDDGAC_30155 - hypothetical protein, at 56,910 to 57,161
_30155
JDDGAC_30165: yncB - Uncharacterized endonuclease, at 57,363 to 57,824
yncB
JDDGAC_30170: JDDGAC_30170 - transcriptional regulator, at 57,870 to 58,079
_30170
JDDGAC_30175: JDDGAC_30175 - W0003, at 58,117 to 58,455
_30175
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.930 kb on + strand, within dAP2 at 55.951 kb on + strand, within dAP2 at 55.977 kb on + strand, within dAP2 at 55.977 kb on + strand, within dAP2 at 55.977 kb on + strand, within dAP2 at 55.977 kb on + strand, within dAP2 at 55.977 kb on + strand, within dAP2 at 55.978 kb on - strand, within dAP2 at 55.978 kb on - strand, within dAP2 at 55.978 kb on - strand, within dAP2 at 55.978 kb on - strand, within dAP2 at 55.979 kb on + strand, within dAP2 at 55.980 kb on - strand, within dAP2 at 55.980 kb on - strand, within dAP2 at 55.980 kb on - strand, within dAP2 at 55.980 kb on - strand, within dAP2 at 55.980 kb on - strand, within dAP2 at 55.980 kb on - strand, within dAP2 at 56.002 kb on + strand, within dAP2 at 56.012 kb on + strand, within dAP2 at 56.013 kb on - strand, within dAP2 at 56.041 kb on + strand at 56.041 kb on + strand at 56.042 kb on - strand at 56.042 kb on - strand at 56.046 kb on - strand at 56.070 kb on + strand at 56.071 kb on - strand at 56.073 kb on + strand at 56.073 kb on + strand at 56.074 kb on - strand at 56.103 kb on - strand at 56.108 kb on + strand at 56.125 kb on - strand at 56.125 kb on - strand at 56.125 kb on - strand at 56.189 kb on - strand at 56.189 kb on - strand at 56.189 kb on - strand at 56.208 kb on + strand at 56.523 kb on + strand, within finO at 56.609 kb on + strand, within finO at 56.610 kb on - strand, within finO at 56.657 kb on + strand, within finO at 56.658 kb on - strand, within finO at 56.658 kb on - strand, within finO at 56.671 kb on + strand, within finO at 56.671 kb on + strand, within finO at 56.671 kb on + strand, within finO at 56.671 kb on + strand, within finO at 56.672 kb on - strand, within finO at 56.672 kb on - strand, within finO at 56.809 kb on - strand at 56.825 kb on + strand at 56.858 kb on - strand at 56.866 kb on + strand at 56.875 kb on - strand at 56.877 kb on + strand at 56.877 kb on + strand at 56.978 kb on - strand, within JDDGAC_30155 at 57.422 kb on + strand, within yncB at 57.505 kb on + strand, within yncB at 57.600 kb on + strand, within yncB at 57.643 kb on - strand, within yncB at 57.674 kb on + strand, within yncB at 57.703 kb on - strand, within yncB at 57.711 kb on + strand, within yncB at 57.805 kb on + strand at 57.822 kb on + strand at 57.898 kb on - strand, within JDDGAC_30170 at 58.077 kb on + strand at 58.090 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 55,930 + dAP2 JDDGAC_30145 0.79 +0.3 55,951 + dAP2 JDDGAC_30145 0.81 +1.1 55,977 + dAP2 JDDGAC_30145 0.84 +1.1 55,977 + dAP2 JDDGAC_30145 0.84 +1.4 55,977 + dAP2 JDDGAC_30145 0.84 +0.1 55,977 + dAP2 JDDGAC_30145 0.84 -0.4 55,977 + dAP2 JDDGAC_30145 0.84 -0.5 55,978 - dAP2 JDDGAC_30145 0.85 -1.0 55,978 - dAP2 JDDGAC_30145 0.85 -0.0 55,978 - dAP2 JDDGAC_30145 0.85 +1.0 55,978 - dAP2 JDDGAC_30145 0.85 +0.5 55,979 + dAP2 JDDGAC_30145 0.85 +0.4 55,980 - dAP2 JDDGAC_30145 0.85 -1.4 55,980 - dAP2 JDDGAC_30145 0.85 -1.5 55,980 - dAP2 JDDGAC_30145 0.85 +1.0 55,980 - dAP2 JDDGAC_30145 0.85 +1.7 55,980 - dAP2 JDDGAC_30145 0.85 +0.3 55,980 - dAP2 JDDGAC_30145 0.85 -2.3 56,002 + dAP2 JDDGAC_30145 0.87 -0.3 56,012 + dAP2 JDDGAC_30145 0.89 +1.2 56,013 - dAP2 JDDGAC_30145 0.89 +1.6 56,041 + +1.4 56,041 + +0.3 56,042 - -1.2 56,042 - -1.6 56,046 - -1.5 56,070 + -1.5 56,071 - -0.9 56,073 + +1.7 56,073 + +0.9 56,074 - +0.0 56,103 - +0.5 56,108 + -0.4 56,125 - -0.7 56,125 - +0.6 56,125 - -0.1 56,189 - +0.2 56,189 - -2.8 56,189 - +0.5 56,208 + +0.5 56,523 + finO JDDGAC_30150 0.55 +2.0 56,609 + finO JDDGAC_30150 0.71 +1.6 56,610 - finO JDDGAC_30150 0.71 +0.6 56,657 + finO JDDGAC_30150 0.79 -0.7 56,658 - finO JDDGAC_30150 0.79 -0.5 56,658 - finO JDDGAC_30150 0.79 +0.8 56,671 + finO JDDGAC_30150 0.82 +0.5 56,671 + finO JDDGAC_30150 0.82 +0.9 56,671 + finO JDDGAC_30150 0.82 -1.0 56,671 + finO JDDGAC_30150 0.82 -1.4 56,672 - finO JDDGAC_30150 0.82 -1.2 56,672 - finO JDDGAC_30150 0.82 +1.1 56,809 - -1.2 56,825 + -0.5 56,858 - -2.8 56,866 + +0.3 56,875 - -0.2 56,877 + +0.2 56,877 + -0.5 56,978 - JDDGAC_30155 0.27 -2.4 57,422 + yncB JDDGAC_30165 0.13 -0.1 57,505 + yncB JDDGAC_30165 0.31 +0.4 57,600 + yncB JDDGAC_30165 0.51 +0.7 57,643 - yncB JDDGAC_30165 0.61 +0.5 57,674 + yncB JDDGAC_30165 0.67 +0.4 57,703 - yncB JDDGAC_30165 0.74 +0.2 57,711 + yncB JDDGAC_30165 0.75 +0.7 57,805 + -0.4 57,822 + +0.9 57,898 - JDDGAC_30170 0.13 -1.7 58,077 + +2.6 58,090 + -1.5
Or see this region's nucleotide sequence