Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssb and yubL are separated by 56 nucleotides yubL and yubM are separated by 65 nucleotides
JDDGAC_30050: ssb - single-stranded DNA-binding protein, at 31,411 to 31,863
ssb
JDDGAC_30055: yubL - UPF0401 protein YubL, at 31,920 to 32,153
yubL
JDDGAC_30060: yubM - Uncharacterized protein YubM, at 32,219 to 34,177
yubM
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.120 kb on - strand at 31.428 kb on + strand at 31.429 kb on - strand at 31.478 kb on - strand, within ssb at 31.645 kb on + strand, within ssb at 31.645 kb on + strand, within ssb at 31.646 kb on - strand, within ssb at 31.672 kb on - strand, within ssb at 31.720 kb on - strand, within ssb at 31.720 kb on - strand, within ssb at 31.748 kb on + strand, within ssb at 31.748 kb on + strand, within ssb at 31.939 kb on + strand at 32.058 kb on - strand, within yubL at 32.081 kb on + strand, within yubL at 32.082 kb on - strand, within yubL at 32.147 kb on + strand at 32.147 kb on + strand at 32.152 kb on - strand at 32.152 kb on - strand at 32.152 kb on - strand at 32.152 kb on - strand at 32.152 kb on - strand at 32.152 kb on - strand at 32.194 kb on - strand at 32.211 kb on + strand at 32.211 kb on + strand at 32.211 kb on + strand at 32.211 kb on + strand at 32.212 kb on - strand at 32.214 kb on + strand at 32.214 kb on + strand at 32.214 kb on + strand at 32.214 kb on + strand at 32.214 kb on + strand at 32.214 kb on + strand at 32.215 kb on - strand at 32.215 kb on - strand at 32.215 kb on - strand at 32.215 kb on - strand at 32.215 kb on - strand at 32.218 kb on + strand at 32.219 kb on - strand at 32.219 kb on - strand at 32.237 kb on - strand at 32.237 kb on - strand at 32.266 kb on + strand at 32.266 kb on + strand at 32.350 kb on + strand at 32.419 kb on + strand, within yubM at 32.437 kb on - strand, within yubM at 32.626 kb on + strand, within yubM at 32.712 kb on - strand, within yubM at 32.899 kb on - strand, within yubM at 32.899 kb on - strand, within yubM at 32.978 kb on - strand, within yubM at 33.032 kb on + strand, within yubM at 33.033 kb on - strand, within yubM at 33.033 kb on - strand, within yubM at 33.133 kb on + strand, within yubM at 33.134 kb on - strand, within yubM
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 31,120 - +0.5 31,428 + +0.1 31,429 - -1.7 31,478 - ssb JDDGAC_30050 0.15 -1.0 31,645 + ssb JDDGAC_30050 0.52 -1.1 31,645 + ssb JDDGAC_30050 0.52 +1.5 31,646 - ssb JDDGAC_30050 0.52 +0.5 31,672 - ssb JDDGAC_30050 0.58 +0.3 31,720 - ssb JDDGAC_30050 0.68 +1.3 31,720 - ssb JDDGAC_30050 0.68 -0.1 31,748 + ssb JDDGAC_30050 0.74 -1.5 31,748 + ssb JDDGAC_30050 0.74 +0.2 31,939 + +0.3 32,058 - yubL JDDGAC_30055 0.59 -1.4 32,081 + yubL JDDGAC_30055 0.69 +0.5 32,082 - yubL JDDGAC_30055 0.69 -1.0 32,147 + -0.1 32,147 + +1.9 32,152 - -0.4 32,152 - +0.6 32,152 - -0.3 32,152 - +1.4 32,152 - +0.3 32,152 - -0.2 32,194 - +0.7 32,211 + -1.3 32,211 + -1.2 32,211 + -1.1 32,211 + -1.4 32,212 - -1.3 32,214 + -2.4 32,214 + +1.3 32,214 + +0.3 32,214 + -1.0 32,214 + -2.6 32,214 + -0.0 32,215 - -0.5 32,215 - +0.1 32,215 - +0.4 32,215 - +0.8 32,215 - +0.5 32,218 + +1.1 32,219 - +0.6 32,219 - -2.0 32,237 - +0.5 32,237 - +0.1 32,266 + -1.1 32,266 + -2.0 32,350 + +1.0 32,419 + yubM JDDGAC_30060 0.10 -1.3 32,437 - yubM JDDGAC_30060 0.11 +1.0 32,626 + yubM JDDGAC_30060 0.21 +1.1 32,712 - yubM JDDGAC_30060 0.25 +0.8 32,899 - yubM JDDGAC_30060 0.35 +0.0 32,899 - yubM JDDGAC_30060 0.35 -0.2 32,978 - yubM JDDGAC_30060 0.39 +0.1 33,032 + yubM JDDGAC_30060 0.42 -1.6 33,033 - yubM JDDGAC_30060 0.42 -1.1 33,033 - yubM JDDGAC_30060 0.42 +0.8 33,133 + yubM JDDGAC_30060 0.47 +0.6 33,134 - yubM JDDGAC_30060 0.47 +0.5
Or see this region's nucleotide sequence